8VDE | pdb_00008vde

SaPI1 portal-capsid interface in mature capsids with DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth Q2]	V-set	e8vdeQ21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Y [auth Q1]	V-set	e8vdeQ11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
X [auth P9]	V-set	e8vdeP91	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
W [auth P8]	V-set	e8vdeP81	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
V [auth P7]	V-set	e8vdeP71	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
U [auth P6]	V-set	e8vdeP61	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
T [auth P5]	V-set	e8vdeP51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
S [auth P4]	V-set	e8vdeP41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
R [auth P3]	V-set	e8vdeP31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Q [auth P2]	V-set	e8vdeP21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
P [auth P1]	V-set	e8vdeP11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
AA [auth Q3]	V-set	e8vdeQ31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
O [auth D5]	V-set	e8vdeD51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
N [auth D4]	V-set	e8vdeD41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
M [auth D3]	V-set	e8vdeD31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
L [auth D2]	V-set	e8vdeD21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
K [auth D1]	V-set	e8vdeD11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
J [auth C5]	V-set	e8vdeC51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
I [auth C4]	V-set	e8vdeC41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
H [auth C3]	V-set	e8vdeC31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
G [auth C2]	V-set	e8vdeC21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
F [auth C1]	V-set	e8vdeC11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
E [auth B5]	V-set	e8vdeB51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
D [auth B4]	V-set	e8vdeB41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
C [auth B3]	V-set	e8vdeB31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
B [auth B2]	V-set	e8vdeB21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
A [auth B1]	V-set	e8vdeB11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], T [auth P5], U [auth P6], V [auth P7], W [auth P8], X [auth P9], Y [auth Q1], Z [auth Q2]	PF05133	Phage portal protein, SPP1 Gp6-like (SPP1_portal)	Phage portal protein, SPP1 Gp6-like	-	Family
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5], K [auth D1], L [auth D2], M [auth D3], N [auth D4], O [auth D5]	PF05065	Phage capsid family (Phage_capsid)	Phage capsid family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], T [auth P5], U [auth P6], V [auth P7], W [auth P8], X [auth P9], Y [auth Q1], Z [auth Q2]	Portal protein	-	-	-
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5], K [auth D1], L [auth D2], M [auth D3], N [auth D4], O [auth D5]	Major capsid protein	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], T [auth P5], U [auth P6], V [auth P7], W [auth P8], X [auth P9], Y [auth Q1], Z [auth Q2]	IPR006428	Portal protein, SPP1-type	Family
AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], T [auth P5], U [auth P6], V [auth P7], W [auth P8], X [auth P9], Y [auth Q1], Z [auth Q2]	IPR021145	Portal protein SPP1 Gp6-like	Family
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5], K [auth D1], L [auth D2], M [auth D3], N [auth D4], O [auth D5]	IPR054612	Phage capsid-like, C-terminal	Domain
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5], K [auth D1], L [auth D2], M [auth D3], N [auth D4], O [auth D5]	IPR024455	Phage capsid	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.