8VDE | pdb_00008vde

SaPI1 portal-capsid interface in mature capsids with DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth Q2]	V-set	e8vdeQ21	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
Y [auth Q1]	V-set	e8vdeQ11	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
X [auth P9]	V-set	e8vdeP91	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
W [auth P8]	V-set	e8vdeP81	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
V [auth P7]	V-set	e8vdeP71	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
U [auth P6]	V-set	e8vdeP61	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
T [auth P5]	V-set	e8vdeP51	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
S [auth P4]	V-set	e8vdeP41	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
R [auth P3]	V-set	e8vdeP31	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
Q [auth P2]	V-set	e8vdeP21	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
P [auth P1]	V-set	e8vdeP11	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
AA [auth Q3]	V-set	e8vdeQ31	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
O [auth D5]	V-set	e8vdeD51	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
N [auth D4]	V-set	e8vdeD41	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
M [auth D3]	V-set	e8vdeD31	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
L [auth D2]	V-set	e8vdeD21	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
K [auth D1]	V-set	e8vdeD11	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
J [auth C5]	V-set	e8vdeC51	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
I [auth C4]	V-set	e8vdeC41	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
H [auth C3]	V-set	e8vdeC31	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
G [auth C2]	V-set	e8vdeC21	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
F [auth C1]	V-set	e8vdeC11	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
E [auth B5]	V-set	e8vdeB51	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
D [auth B4]	V-set	e8vdeB41	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
C [auth B3]	V-set	e8vdeB31	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
B [auth B2]	V-set	e8vdeB21	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
A [auth B1]	V-set	e8vdeB11	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], T [auth P5], U [auth P6], V [auth P7], W [auth P8], X [auth P9], Y [auth Q1], Z [auth Q2]	PF05133	Phage portal protein, SPP1 Gp6-like (SPP1_portal)	Phage portal protein, SPP1 Gp6-like	-	Family
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5], K [auth D1], L [auth D2], M [auth D3], N [auth D4], O [auth D5]	PF05065	Phage capsid family (Phage_capsid)	Phage capsid family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], T [auth P5], U [auth P6], V [auth P7], W [auth P8], X [auth P9], Y [auth Q1], Z [auth Q2]	Portal protein	-	-	-
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5], K [auth D1], L [auth D2], M [auth D3], N [auth D4], O [auth D5]	Major capsid protein	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], T [auth P5], U [auth P6], V [auth P7], W [auth P8], X [auth P9], Y [auth Q1], Z [auth Q2]	IPR006428	Portal protein, SPP1-type	Family
AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], AA [auth Q3], P [auth P1], Q [auth P2], R [auth P3], S [auth P4], T [auth P5], U [auth P6], V [auth P7], W [auth P8], X [auth P9], Y [auth Q1], Z [auth Q2]	IPR021145	Portal protein SPP1 Gp6-like	Family
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5], K [auth D1], L [auth D2], M [auth D3], N [auth D4], O [auth D5]	IPR054612	Phage capsid-like, C-terminal	Domain
A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], A [auth B1], B [auth B2], C [auth B3], D [auth B4], E [auth B5], F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5], K [auth D1], L [auth D2], M [auth D3], N [auth D4], O [auth D5]	IPR024455	Phage capsid	Family