8V3W | pdb_00008v3w

CryoEM Structure of Diffocin - precontracted - Baseplate - focused refinement on triplex region

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth d]	V-set	e8v3wd1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
YA [auth p]	V-set	e8v3wp1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
O [auth P]	V-set	e8v3wP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
N [auth R]	V-set	e8v3wR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
J [auth I]	V-set	e8v3wI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
I [auth a]	V-set	e8v3wa1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
HA [auth 5]	V-set	e8v3w51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
GA [auth 7]	V-set	e8v3w71	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
EB [auth k]	V-set	e8v3wk1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
DB [auth m]	V-set	e8v3wm1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
CA [auth z]	V-set	e8v3wz1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
BA [auth 9]	V-set	e8v3w91	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
XA [auth q]	V-set	e8v3wq1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
P [auth K]	V-set	e8v3wK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
M [auth S]	V-set	e8v3wS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
K [auth D]	V-set	e8v3wD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
IA [auth 1]	V-set	e8v3w11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
H [auth c]	V-set	e8v3wc1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
FB [auth f]	V-set	e8v3wf1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
FA [auth 8]	V-set	e8v3w81	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
DA [auth u]	V-set	e8v3wu1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
CB [auth n]	V-set	e8v3wn1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
AB [auth X]	V-set	e8v3wX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
AA	V-set	e8v3wAA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BB [auth b], EA [auth x], L [auth H]	Hub-Hydrolase (CD1368)	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-
BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], HA [auth 5], I [auth a], J [auth I], N [auth R], O [auth P], YA [auth p], ZA [auth d]	Tube (CD1364)	-	-	-
AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], FB [auth f], H [auth c], IA [auth 1], K [auth D], M [auth S], P [auth K], XA [auth q]	Sheath (CD1363)	-	-	-
G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], Z [auth 2]	Sheath initiator (CD1370)	-	-	-
F [auth G], HB [auth o], KA [auth T], TA [auth y], UA [auth Z], F [auth G], HB [auth o], KA [auth T], TA [auth y], UA [auth Z], Y [auth w]	Tube tail (CD1367)	-	-	-
E [auth B], SA [auth V], X [auth s]	Tape measure protein (CD1366)	-	-	-
D [auth C], RA [auth W], W [auth t]	Spike (CD1369)	-	-	-
C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], V [auth 4]	TRI-1 (CD1372)	-	-	-
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	TRI-2 (CD1371)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BB [auth b], EA [auth x], L [auth H]	IPR000064	Endopeptidase, NLPC/P60 domain	Domain
BB [auth b], EA [auth x], L [auth H]	IPR056937	YqbQ/XkdQ	Domain
BB [auth b], EA [auth x], L [auth H]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
BB [auth b], EA [auth x], L [auth H]	IPR051202	Peptidase C40	Family
BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], HA [auth 5], I [auth a], J [auth I], N [auth R], O [auth P], YA [auth p], ZA [auth d]	IPR018989	Phage tail tube protein	Family
BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], HA [auth 5], I [auth a], J [auth I], N [auth R], O [auth P], YA [auth p], ZA [auth d]	IPR038628	XkdM-like superfamily	Homologous Superfamily
AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], FB [auth f], H [auth c], IA [auth 1], K [auth D], M [auth S], P [auth K], XA [auth q]	IPR020287	Tail sheath protein, C-terminal domain	Domain
AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], FB [auth f], H [auth c], IA [auth 1], K [auth D], M [auth S], P [auth K], XA [auth q]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], Z [auth 2]	IPR020288	Contractile injection system sheath initiator	Family
D [auth C], RA [auth W], W [auth t]	IPR022555	Protein of unknown function, DUF2577	Family
C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], V [auth 4]	IPR018755	Bacteriophage Mu-like, Gp48	Family
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	IPR052399	Phage Baseplate Assembly Protein	Family
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	IPR058530	Baseplate J-like, C-terminal domain	Domain
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	IPR006949	Baseplate protein J-like, barrel domain	Domain
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	IPR058531	Baseplate J-like, central domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.