8V3W | pdb_00008v3w

CryoEM Structure of Diffocin - precontracted - Baseplate - focused refinement on triplex region

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
BB [auth b], EA [auth x], L [auth H]	PF00877	NlpC/P60 family (NLPC_P60)	NlpC/P60 family	The function of this domain is unknown. It is found in several lipoproteins.	Domain
BB [auth b], EA [auth x], L [auth H]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain
BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], HA [auth 5], I [auth a], J [auth I], N [auth R], O [auth P], YA [auth p], ZA [auth d]	PF10076	Bacteriophage Mu-like, Gp48 (Phage_Mu_Gp48)	Bacteriophage Mu-like, Gp48	-	Family
BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], HA [auth 5], I [auth a], J [auth I], N [auth R], O [auth P], YA [auth p], ZA [auth d]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain
AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], FB [auth f], H [auth c], IA [auth 1], K [auth D], M [auth S], P [auth K], XA [auth q]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], FB [auth f], H [auth c], IA [auth 1], K [auth D], M [auth S], P [auth K], XA [auth q]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], Z [auth 2]	PF10076	Bacteriophage Mu-like, Gp48 (Phage_Mu_Gp48)	Bacteriophage Mu-like, Gp48	-	Family
G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], Z [auth 2]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], Z [auth 2]	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
F [auth G], HB [auth o], KA [auth T], TA [auth y], UA [auth Z], F [auth G], HB [auth o], KA [auth T], TA [auth y], UA [auth Z], Y [auth w]	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
F [auth G], HB [auth o], KA [auth T], TA [auth y], UA [auth Z], F [auth G], HB [auth o], KA [auth T], TA [auth y], UA [auth Z], Y [auth w]	PF10844	Protein of unknown function (DUF2577) (DUF2577)	Protein of unknown function (DUF2577)	This family of proteins has no known function	Domain
E [auth B], SA [auth V], X [auth s]	PF00877	NlpC/P60 family (NLPC_P60)	NlpC/P60 family	The function of this domain is unknown. It is found in several lipoproteins.	Domain
E [auth B], SA [auth V], X [auth s]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain
D [auth C], RA [auth W], W [auth t]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
D [auth C], RA [auth W], W [auth t]	PF10844	Protein of unknown function (DUF2577) (DUF2577)	Protein of unknown function (DUF2577)	This family of proteins has no known function	Domain
C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], V [auth 4]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], V [auth 4]	PF10076	Bacteriophage Mu-like, Gp48 (Phage_Mu_Gp48)	Bacteriophage Mu-like, Gp48	-	Family
C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], V [auth 4]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BB [auth b], EA [auth x], L [auth H]	Hub-Hydrolase (CD1368)	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	-	-
BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], HA [auth 5], I [auth a], J [auth I], N [auth R], O [auth P], YA [auth p], ZA [auth d]	Tube (CD1364)	-	-	-
AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], FB [auth f], H [auth c], IA [auth 1], K [auth D], M [auth S], P [auth K], XA [auth q]	Sheath (CD1363)	-	-	-
G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], Z [auth 2]	Sheath initiator (CD1370)	-	-	-
F [auth G], HB [auth o], KA [auth T], TA [auth y], UA [auth Z], F [auth G], HB [auth o], KA [auth T], TA [auth y], UA [auth Z], Y [auth w]	Tube tail (CD1367)	-	-	-
E [auth B], SA [auth V], X [auth s]	Tape measure protein (CD1366)	-	-	-
D [auth C], RA [auth W], W [auth t]	Spike (CD1369)	-	-	-
C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], V [auth 4]	TRI-1 (CD1372)	-	-	-
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	TRI-2 (CD1371)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BB [auth b], EA [auth x], L [auth H]	IPR000064	Endopeptidase, NLPC/P60 domain	Domain
BB [auth b], EA [auth x], L [auth H]	IPR056937	YqbQ/XkdQ	Domain
BB [auth b], EA [auth x], L [auth H]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
BB [auth b], EA [auth x], L [auth H]	IPR051202	Peptidase C40	Family
BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], HA [auth 5], I [auth a], J [auth I], N [auth R], O [auth P], YA [auth p], ZA [auth d]	IPR018989	Phage tail tube protein	Family
BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], BA [auth 9], CA [auth z], DB [auth m], EB [auth k], GA [auth 7], HA [auth 5], I [auth a], J [auth I], N [auth R], O [auth P], YA [auth p], ZA [auth d]	IPR038628	XkdM-like superfamily	Homologous Superfamily
AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], FB [auth f], H [auth c], IA [auth 1], K [auth D], M [auth S], P [auth K], XA [auth q]	IPR020287	Tail sheath protein, C-terminal domain	Domain
AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], AA, AB [auth X], CB [auth n], DA [auth u], FA [auth 8], FB [auth f], H [auth c], IA [auth 1], K [auth D], M [auth S], P [auth K], XA [auth q]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], G [auth L], GB [auth j], JA [auth O], VA [auth g], WA [auth F], Z [auth 2]	IPR020288	Contractile injection system sheath initiator	Family
D [auth C], RA [auth W], W [auth t]	IPR022555	Protein of unknown function, DUF2577	Family
C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], C [auth N], KB [auth l], NA [auth 6], QA [auth i], S [auth Q], V [auth 4]	IPR018755	Bacteriophage Mu-like, Gp48	Family
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	IPR052399	Phage Baseplate Assembly Protein	Family
A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], A [auth E], B [auth A], IB [auth e], JB [auth h], LA [auth 0], MA [auth 3], OA [auth Y], PA [auth U], Q [auth J], R [auth M], T [auth v], U [auth r]	IPR006949	Baseplate protein J-like, barrel domain	Domain