8R6C | pdb_00008r6c

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth B]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
DB [auth z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
CB [auth y]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
BB [auth x]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
AB [auth w]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
ZA [auth v]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
YA [auth u]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
XA [auth t]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
WA [auth s]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
VA [auth r]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
UA [auth q]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
TA [auth p]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
SA [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
RA [auth n]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
QA [auth m]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
PA [auth l]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
OA [auth k]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
NA [auth j]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
MA [auth i]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
KA [auth g]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
KA [auth g]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
JA [auth f]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
IA [auth e]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
HA [auth d]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
GA [auth c]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
GA [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
AA [auth U]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
Y [auth S]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
W [auth Q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
V [auth P]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
U [auth O]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
T [auth N]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
R [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
Q [auth K]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
P [auth J]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
O [auth I]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
N [auth H]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
J [auth D]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
A [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
I [auth C]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
I [auth C]PF07650KH domain (KH_2)KH domainDomain
I [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
H [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
E [auth 4]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
D [auth 3]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
DA [auth Z]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
C [auth 2]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
CA [auth Y]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
AA [auth U]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
AA [auth U]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
Z [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
Z [auth T]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
Z [auth T]PF00467KOW motif (KOW)KOW motif- Family
Y [auth S]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
Y [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
X [auth R]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
X [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
W [auth Q]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
W [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
V [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
V [auth P]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
U [auth O]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
U [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
T [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
B [auth 1]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
S [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
S [auth M]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
R [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
R [auth L]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
Q [auth K]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
Q [auth K]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
P [auth J]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
P [auth J]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
O [auth I]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
O [auth I]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
N [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
N [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
M [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
L [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
L [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
L [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
K [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
K [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
K [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
J [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
J [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
J [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
A [auth 0]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth C]Small ribosomal subunit protein uS3
H [auth B]30S ribosomal protein S2
G [auth A]16S ribosomal RNA---
F [auth 5]N-Formylmethionine tRNA---
EB [auth 6]Paenilamicin B2---
DB [auth z]Large ribosomal subunit protein bL32
CB [auth y]Large ribosomal subunit protein uL30
BB [auth x]Large ribosomal subunit protein uL29
AB [auth w]Large ribosomal subunit protein bL28
ZA [auth v]Large ribosomal subunit protein bL27
YA [auth u]50S ribosomal protein L25
XA [auth t]Large ribosomal subunit protein uL24
E [auth 4]Large ribosomal subunit protein bL31A
WA [auth s]Large ribosomal subunit protein uL23
VA [auth r]Large ribosomal subunit protein uL22
UA [auth q]Large ribosomal subunit protein bL21
TA [auth p]Large ribosomal subunit protein bL20
SA [auth o]Large ribosomal subunit protein bL19
RA [auth n]Large ribosomal subunit protein uL18
QA [auth m]Large ribosomal subunit protein bL17
PA [auth l]Large ribosomal subunit protein uL16
OA [auth k]50S ribosomal protein L15
NA [auth j]Large ribosomal subunit protein uL14
D [auth 3]Large ribosomal subunit protein bL36A
MA [auth i]Large ribosomal subunit protein uL13
LA [auth h]Large ribosomal subunit protein bL9
KA [auth g]Large ribosomal subunit protein uL6
JA [auth f]Large ribosomal subunit protein uL5
IA [auth e]Large ribosomal subunit protein uL4
HA [auth d]Large ribosomal subunit protein uL3
GA [auth c]Large ribosomal subunit protein uL2
FA [auth b]5S ribosomal RNA---
EA [auth a]23S ribosomal RNA---
DA [auth Z]Leucine-tRNA---
C [auth 2]Large ribosomal subunit protein bL35
CA [auth Y]Isoeucine-tRNA---
BA [auth X]mRNA---
AA [auth U]Small ribosomal subunit protein bS21
Z [auth T]30S ribosomal protein S20
Y [auth S]Small ribosomal subunit protein uS19
X [auth R]Small ribosomal subunit protein bS18
W [auth Q]Small ribosomal subunit protein uS17
V [auth P]30S ribosomal protein S16
U [auth O]Small ribosomal subunit protein uS15
T [auth N]Small ribosomal subunit protein uS14
B [auth 1]Large ribosomal subunit protein bL34
S [auth M]Small ribosomal subunit protein uS13
R [auth L]Small ribosomal subunit protein uS12
Q [auth K]Small ribosomal subunit protein uS11
P [auth J]Small ribosomal subunit protein uS10
O [auth I]Small ribosomal subunit protein uS9
N [auth H]Small ribosomal subunit protein uS8
M [auth G]30S ribosomal protein S7
L [auth F]30S ribosomal protein S6, fully modified isoform
K [auth E]Small ribosomal subunit protein uS5
J [auth D]Small ribosomal subunit protein uS4
A [auth 0]Large ribosomal subunit protein bL33

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth C]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
I [auth C]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
I [auth C]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
I [auth C]IPR004087K Homology domainDomain
I [auth C]IPR004044K Homology domain, type 2Domain
I [auth C]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
I [auth C]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
I [auth C]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
H [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
H [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
H [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
H [auth B]IPR001865Small ribosomal subunit protein uS2Family
DB [auth z]IPR002677Large ribosomal subunit protein bL32Family
DB [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DB [auth z]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
CB [auth y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
CB [auth y]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
CB [auth y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
CB [auth y]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
BB [auth x]IPR050063Universal ribosomal protein uL29Family
BB [auth x]IPR001854Large ribosomal subunit protein uL29Family
BB [auth x]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BB [auth x]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
AB [auth w]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
AB [auth w]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
AB [auth w]IPR026569Large ribosomal subunit protein bL28Family
AB [auth w]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
ZA [auth v]IPR001684Large ribosomal subunit protein bL27Family
ZA [auth v]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
YA [auth u]IPR020055Ribosomal protein bL25, short-formFamily
YA [auth u]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
YA [auth u]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
YA [auth u]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
YA [auth u]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
XA [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
XA [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
XA [auth t]IPR003256Large ribosomal subunit protein uL24Family
XA [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
XA [auth t]IPR005824KOWDomain
XA [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
E [auth 4]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
E [auth 4]IPR027491Large ribosomal subunit protein bL31 type AFamily
E [auth 4]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
E [auth 4]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
WA [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
WA [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
WA [auth s]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
WA [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
VA [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
VA [auth r]IPR001063Large ribosomal subunit protein uL22Family
VA [auth r]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
VA [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
VA [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
UA [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
UA [auth q]IPR001787Large ribosomal subunit protein bL21Family
UA [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
UA [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
TA [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
TA [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
TA [auth p]IPR005813Large ribosomal subunit protein bL20Family
SA [auth o]IPR001857Large ribosomal subunit protein bL19Family
SA [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
SA [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
SA [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
RA [auth n]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
RA [auth n]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
QA [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
QA [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
QA [auth m]IPR000456Large ribosomal subunit protein bL17Family
PA [auth l]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
PA [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
PA [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
PA [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
PA [auth l]IPR047873Large ribosomal subunit protein uL16Family
OA [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
OA [auth k]IPR030878Large ribosomal subunit protein uL15Family
OA [auth k]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
OA [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
OA [auth k]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
NA [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
NA [auth j]IPR000218Large ribosomal subunit protein uL14Family
NA [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
NA [auth j]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
D [auth 3]IPR000473Large ribosomal subunit protein bL36Family
D [auth 3]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
MA [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
MA [auth i]IPR005822Large ribosomal subunit protein uL13Family
MA [auth i]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
MA [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
LA [auth h]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
LA [auth h]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
LA [auth h]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
LA [auth h]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
LA [auth h]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
LA [auth h]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
LA [auth h]IPR000244Large ribosomal subunit protein bL9Family
KA [auth g]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
KA [auth g]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
KA [auth g]IPR000702Large ribosomal subunit protein uL6-likeFamily
KA [auth g]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
KA [auth g]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
JA [auth f]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
JA [auth f]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
JA [auth f]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
JA [auth f]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
JA [auth f]IPR002132Large ribosomal subunit protein uL5Family
JA [auth f]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
IA [auth e]IPR013005Large ribosomal subunit protein uL4-likeFamily
IA [auth e]IPR002136Large ribosomal subunit protein uL4Family
IA [auth e]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
HA [auth d]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
HA [auth d]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
HA [auth d]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
HA [auth d]IPR000597Large ribosomal subunit protein uL3Family
GA [auth c]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
GA [auth c]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
GA [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
GA [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth c]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
GA [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
GA [auth c]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
GA [auth c]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
GA [auth c]IPR002171Large ribosomal subunit protein uL2Family
C [auth 2]IPR021137Large ribosomal subunit protein bL35-likeFamily
C [auth 2]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
C [auth 2]IPR001706Large ribosomal subunit protein bL35Family
C [auth 2]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
AA [auth U]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
AA [auth U]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
AA [auth U]IPR001911Small ribosomal subunit protein bS21Family
Z [auth T]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
Z [auth T]IPR002583Small ribosomal subunit protein bS20Family
Y [auth S]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
Y [auth S]IPR002222Small ribosomal subunit protein uS19Family
Y [auth S]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Y [auth S]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
X [auth R]IPR001648Small ribosomal subunit protein bS18Family
X [auth R]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
X [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
W [auth Q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
W [auth Q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
W [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
W [auth Q]IPR000266Small ribosomal subunit protein uS17Family
V [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
V [auth P]IPR000307Small ribosomal subunit protein bS16Family
V [auth P]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
U [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
U [auth O]IPR000589Small ribosomal subunit protein uS15Family
U [auth O]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
T [auth N]IPR001209Small ribosomal subunit protein uS14Family
T [auth N]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
T [auth N]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
B [auth 1]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
B [auth 1]IPR000271Large ribosomal subunit protein bL34Family
S [auth M]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
S [auth M]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
S [auth M]IPR001892Small ribosomal subunit protein uS13Family
S [auth M]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
S [auth M]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
R [auth L]IPR005679Ribosomal protein uS12, bacteriaFamily
R [auth L]IPR006032Small ribosomal subunit protein uS12Family
R [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth K]IPR001971Small ribosomal subunit protein uS11Family
Q [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
Q [auth K]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
Q [auth K]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
P [auth J]IPR027486Small ribosomal subunit protein uS10 domainDomain
P [auth J]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
P [auth J]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
P [auth J]IPR001848Small ribosomal subunit protein uS10Family
O [auth I]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
O [auth I]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
O [auth I]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
O [auth I]IPR000754Small ribosomal subunit protein uS9Family
O [auth I]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
N [auth H]IPR000630Small ribosomal subunit protein uS8Family
N [auth H]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
N [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
M [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
M [auth G]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
M [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
M [auth G]IPR000235Small ribosomal subunit protein uS7Family
M [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
L [auth F]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
L [auth F]IPR000529Small ribosomal subunit protein bS6Family
L [auth F]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
L [auth F]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
L [auth F]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
K [auth E]IPR000851Small ribosomal subunit protein uS5Family
K [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
K [auth E]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
K [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
K [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
K [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
J [auth D]IPR002942RNA-binding S4 domainDomain
J [auth D]IPR022801Small ribosomal subunit protein uS4Family
J [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
J [auth D]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
A [auth 0]IPR001705Large ribosomal subunit protein bL33Family
A [auth 0]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
G [auth A]2MG Parent Component: G

G [auth A]4OC Parent Component: C

G [auth A]5MC Parent Component: C

G [auth A]G7M Parent Component: G

G [auth A]PSU Parent Component: U

G [auth A]UR3 Parent Component: U

EB [auth 6]DAL RESIDAA0111 , AA0191

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
EB [auth 6]ORD RESIDAA0111 , AA0191

EB [auth 6]SPD RESIDAA0111 , AA0191

EB [auth 6]YF5 Parent Component: YFZ

EB [auth 6]YFQ Parent Component: ALA

RESIDAA0111 , AA0191

EB [auth 6]YFZ RESIDAA0111 , AA0191

PA [auth l]4D4 Parent Component: ARG

RESIDAA0111 , AA0191

PA [auth l]MS6
HA [auth d]MEQ Parent Component: GLN

RESIDAA0111 , AA0191 , AA0071

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , N5-methyl-L-glutamine MOD:00080
EA [auth a]1MG Parent Component: G

RESIDAA0111 , AA0191 , AA0071

EA [auth a]2MA Parent Component: A

RESIDAA0111 , AA0191 , AA0071

EA [auth a]2MG Parent Component: G

RESIDAA0111 , AA0191 , AA0071

EA [auth a]3TD Parent Component: U

RESIDAA0111 , AA0191 , AA0071

EA [auth a]5MC Parent Component: C

RESIDAA0111 , AA0191 , AA0071

EA [auth a]5MU Parent Component: U

RESIDAA0111 , AA0191 , AA0071

EA [auth a]6MZ Parent Component: A

RESIDAA0111 , AA0191 , AA0071

EA [auth a]G7M Parent Component: G

RESIDAA0111 , AA0191 , AA0071

EA [auth a]H2U Parent Component: U

RESIDAA0111 , AA0191 , AA0071

EA [auth a]OMC Parent Component: C

RESIDAA0111 , AA0191 , AA0071

EA [auth a]OMG Parent Component: G

RESIDAA0111 , AA0191 , AA0071

EA [auth a]OMU Parent Component: U

RESIDAA0111 , AA0191 , AA0071

EA [auth a]PSU Parent Component: U

RESIDAA0111 , AA0191 , AA0071

DA [auth Z]MIA Parent Component: A

RESIDAA0111 , AA0191 , AA0071

CA [auth Y]MKX Parent Component: A

R [auth L]D2T Parent Component: ASP

RESIDAA0111 , AA0191 , AA0071

Q [auth K]IAS RESIDAA0111 , AA0191 , AA0071