8KFA | pdb_00008kfa

Cryo-EM structure of HSV-1 gB with D48 Fab complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth C]	SCOP2B Superfamily	Viral glycoprotein ectodomain-like	8034129	3001498	SCOP2B (2022-06-29)
F [auth B]	SCOP2B Superfamily	Viral glycoprotein ectodomain-like	8034129	3001498	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Viral glycoprotein ectodomain-like	8034129	3001498	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth C]	Hepatitis_core	e8kfaC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Hepatitis_core	ECOD (v295.2)
F [auth B]	Hepatitis_core	e8kfaB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Hepatitis_core	ECOD (v295.2)
C [auth A]	UBX	e8kfaA01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UBX	ECOD (v295.2)
H [auth G]	Hepatitis_core	e8kfaG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Hepatitis_core	ECOD (v295.2)
E [auth F]	Hepatitis_core	e8kfaF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Hepatitis_core	ECOD (v295.2)
B [auth L]	UBX	e8kfaL01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UBX	ECOD (v295.2)
G [auth E]	Hepatitis_core	e8kfaE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Hepatitis_core	ECOD (v295.2)
D	Hepatitis_core	e8kfaD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Hepatitis_core	ECOD (v295.2)
A [auth H]	UBX	e8kfaH01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UBX	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth A], F [auth B], I [auth C]	Envelope glycoprotein B	identical protein binding protein binding binding	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	virion component virion membrane host intracellular membrane-bounded organelle host cellular component host intracellular part host cell membrane other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell endosome membrane host cell cytoplasm host cell part host cell endosome virion component virion membrane host intracellular membrane-bounded organelle host cellular component host intracellular part host cell membrane other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell endosome membrane host cell cytoplasm host cell part host cell endosome host intracellular region viral membrane viral envelope host cell plasma membrane host cell Golgi membrane host cell Golgi apparatus host cell endomembrane system
B [auth L], E [auth F], H [auth G]	D48 light chain	-	-	-
A [auth H], D, G [auth E]	D48 heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], F [auth B], I [auth C]	IPR035381	Herpesvirus Glycoprotein B, PH-like domain 2	Domain
C [auth A], F [auth B], I [auth C]	IPR035377	Herpesvirus Glycoprotein B, PH-like domain 1	Domain
C [auth A], F [auth B], I [auth C]	IPR055341	Herpesvirus glycoprotein B ectodomain C-terminal	Domain
C [auth A], F [auth B], I [auth C]	IPR000234	Herpesvirus Glycoprotein B	Family
C [auth A], F [auth B], I [auth C]	IPR038631	Herpesvirus Glycoprotein B, PH-like domain 2 superfamily	Homologous Superfamily