8JOL
cryo-EM structure of the CED-4/CED-3 holoenzyme
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8003074 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003079 | 3000034 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DEATH domain | 8003077 | 3000069 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104155 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104155 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8003074 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003079 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DEATH domain | 8003077 | 3000069 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22094 | e8jolA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22094 | ECOD (1.6) |
A | PF00619 | e8jolA4 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
A | PF00931 | e8jolA2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
A | PF00931 | e8jolA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
B | PF22094 | e8jolB2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22094 | ECOD (1.6) |
B | PF00619 | e8jolB3 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
B | PF00931 | e8jolB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
B | PF00931 | e8jolB4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
C | PF00619 | e8jolC1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00931 | NB-ARC domain (NB-ARC) | NB-ARC domain | - | Domain | |
PF00619 | Caspase recruitment domain (CARD) | Caspase recruitment domain | Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold . | Domain | |
PF00619 | Caspase recruitment domain (CARD) | Caspase recruitment domain | Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold . | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002182 | NB-ARC | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR011029 | Death-like domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR016854 | Cell death protein 4 | Family | |
IPR001315 | CARD domain | Domain | |
IPR029030 | Caspase-like domain superfamily | Homologous Superfamily | |
IPR001309 | Peptidase C14, p20 domain | Domain | |
IPR011600 | Peptidase C14, caspase domain | Domain | |
IPR016129 | Peptidase family C14A, His active site | Active Site | |
IPR015917 | Peptidase C14A, caspase catalytic domain | Domain | |
IPR011029 | Death-like domain superfamily | Homologous Superfamily | |
IPR033139 | Peptidase family C14A, cysteine active site | Active Site | |
IPR002138 | Peptidase C14, caspase non-catalytic subunit p10 | Domain | |
IPR001315 | CARD domain | Domain |