Annotations: 8JOL

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	DEATH domain	8003077	3000069	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Winged helix DNA-binding domain	8003079	3000034	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RecA-like P-loop NTPases	8003074	3002019	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like	8104155	3002834	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8003079	3000034	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DEATH domain	8003077	3000069	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RecA-like P-loop NTPases	8003074	3002019	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like	8104155	3002834	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF00619	Caspase recruitment domain (CARD)	Caspase recruitment domain	Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold .	Domain
A, B	PF00931	NB-ARC domain (NB-ARC)	NB-ARC domain		Domain
A, B	PF00619	Caspase recruitment domain (CARD)	Caspase recruitment domain	Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold .	Domain
A, B	PF22094	CED4, winged-helix domain (WHD_CED4)	CED4, winged-helix domain	This entry represents a WH-like (HTH superfamily) domain present in CED4 proteins from nematodes. CDE4 together with EGL1, CED9, and CED3, forms a crucial component of the apoptotic signaling cascade necessary for triggering programmed cell death du ...	This entry represents a WH-like (HTH superfamily) domain present in CED4 proteins from nematodes. CDE4 together with EGL1, CED9, and CED3, forms a crucial component of the apoptotic signaling cascade necessary for triggering programmed cell death during both embryonic and postembryonic development [1,2]. Molecular dynamics studies indicate that this WH domain may regulate CED4 dissociation from CED9 [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Cell death protein 3	cysteine-type endopeptidase activator activity endopeptidase activator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity molecular function regulator activity peptidase activator activity endopeptidase regulator activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity endopeptidase activity cysteine-type endopeptidase activator activity endopeptidase activator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity molecular function regulator activity peptidase activator activity endopeptidase regulator activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity endopeptidase activity cysteine-type endopeptidase activator activity involved in apoptotic process cysteine-type endopeptidase regulator activity involved in apoptotic process peptidase activator activity involved in apoptotic process identical protein binding protein binding binding cysteine-type peptidase activity cysteine-type endopeptidase activity	cellular component disassembly regulation of synapse pruning regulation of biological process positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization cell junction disassembly synapse pruning biological regulation positive regulation of biological process positive regulation of synapse pruning cellular component organization regulation of synapse organization cell junction organization cellular component disassembly regulation of synapse pruning regulation of biological process positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization cell junction disassembly synapse pruning biological regulation positive regulation of biological process positive regulation of synapse pruning cellular component organization regulation of synapse organization cell junction organization cellular process regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of biological quality positive regulation of cellular process cell adhesion regulation of cell adhesion primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing metabolic process protein metabolic process macromolecule metabolic process apoptotic process cell death programmed cell death catabolic process protein catabolic process macromolecule catabolic process neuron apoptotic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process actin polymerization or depolymerization actin cytoskeleton organization protein-containing complex organization actin filament organization protein-containing complex disassembly actin filament depolymerization organelle organization actin filament-based process supramolecular fiber organization protein depolymerization cytoskeleton organization cellular response to stimulus cellular response to metal ion response to stimulus negative regulation of response to stimulus negative regulation of biological process cellular response to manganese ion negative regulation of cellular response to manganese ion cellular response to chemical stimulus regulation of cellular response to manganese ion regulation of response to stimulus response to metal ion response to chemical negative regulation of cellular process response to manganese ion regulation of protein stability cellular response to environmental stimulus positive regulation of response to stimulus positive regulation of cellular response to gamma radiation cellular response to gamma radiation positive regulation of response to gamma radiation cellular response to ionizing radiation regulation of cellular response to gamma radiation cellular response to radiation response to ionizing radiation regulation of response to gamma radiation response to radiation response to abiotic stimulus cellular response to abiotic stimulus response to gamma radiation biological process involved in interspecies interaction between organisms response to other organism defense response response to external stimulus defense response to Gram-negative bacterium response to biotic stimulus defense response to bacterium response to bacterium response to stress response to external biotic stimulus developmental process regulation of development, heterochronic regulation of developmental process multicellular organismal process vulval development animal organ development nematode larval development larval development regulation of vulval development multicellular organism development anatomical structure development post-embryonic development cellular homeostasis homeostatic process muscle cell cellular homeostasis apoptotic process involved in development cellular developmental process regulation of cell fate commitment cell fate specification regulation of cell fate specification cell differentiation cell fate commitment execution phase of apoptosis positive regulation of apoptotic process involved in development regulation of apoptotic process involved in development positive regulation of developmental process regulation of protein maturation positive regulation of protein maturation positive regulation of protein metabolic process positive regulation of macromolecule biosynthetic process positive regulation of protein processing regulation of primary metabolic process positive regulation of metabolic process regulation of proteolysis positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of biosynthetic process regulation of protein metabolic process regulation of macromolecule metabolic process regulation of gene expression positive regulation of gene expression positive regulation of proteolysis regulation of protein processing regulation of macromolecule biosynthetic process regulation of metabolic process negative regulation of programmed cell death negative regulation of execution phase of apoptosis regulation of execution phase of apoptosis negative regulation of apoptotic process embryo development ending in birth or egg hatching embryo development regulation of locomotion locomotion	somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane cytoplasm perinuclear region of cytoplasm mitochondrion protein-containing complex catalytic complex caspase complex peptidase complex endopeptidase complex presynapse synapse cell junction
A, B	Cell death protein 4	cysteine-type endopeptidase activator activity endopeptidase activator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity molecular function regulator activity peptidase activator activity endopeptidase regulator activity protein binding binding BH1 domain binding BH domain binding protein domain specific binding cysteine-type endopeptidase activator activity endopeptidase activator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity molecular function regulator activity peptidase activator activity endopeptidase regulator activity protein binding binding BH1 domain binding BH domain binding protein domain specific binding cation binding magnesium ion binding ion binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding ADP binding death domain binding BH3 domain binding enzyme binding protease binding caspase binding cysteine-type endopeptidase activator activity involved in apoptotic process cysteine-type endopeptidase regulator activity involved in apoptotic process peptidase activator activity involved in apoptotic process identical protein binding	cellular component disassembly regulation of synapse pruning regulation of biological process positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization cell junction disassembly synapse pruning biological regulation positive regulation of biological process positive regulation of synapse pruning cellular component organization regulation of synapse organization cell junction organization cellular component disassembly regulation of synapse pruning regulation of biological process positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization cell junction disassembly synapse pruning biological regulation positive regulation of biological process positive regulation of synapse pruning cellular component organization regulation of synapse organization cell junction organization cellular process regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of biological quality positive regulation of cellular process cell adhesion regulation of cell adhesion apoptotic process involved in development developmental process anatomical structure development apoptotic process cell death programmed cell death negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death negative regulation of apoptotic process negative regulation of cellular process regulation of cellular component size regulation of cell size regulation of anatomical structure size positive regulation of programmed cell death positive regulation of apoptotic process actin polymerization or depolymerization actin cytoskeleton organization protein-containing complex organization actin filament organization protein-containing complex disassembly actin filament depolymerization organelle organization actin filament-based process supramolecular fiber organization protein depolymerization cytoskeleton organization regulation of developmental process positive regulation of apoptotic process involved in development regulation of apoptotic process involved in development positive regulation of developmental process regulation of protein maturation positive regulation of protein maturation positive regulation of protein metabolic process positive regulation of macromolecule biosynthetic process positive regulation of protein processing protein maturation regulation of primary metabolic process positive regulation of metabolic process regulation of proteolysis positive regulation of biosynthetic process proteolysis positive regulation of macromolecule metabolic process protein metabolic process regulation of biosynthetic process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of proteolysis regulation of protein processing protein processing metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of execution phase of apoptosis regulation of execution phase of apoptosis execution phase of apoptosis multicellular organism development multicellular organismal process anatomical structure morphogenesis embryonic morphogenesis embryo development regulation of protein stability biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus defense response to Gram-negative bacterium response to biotic stimulus defense response to bacterium response to bacterium response to stress response to external biotic stimulus regulation of development, heterochronic embryo development ending in birth or egg hatching cellular homeostasis homeostatic process muscle cell cellular homeostasis	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane protein-containing complex catalytic complex caspase complex peptidase complex endopeptidase complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane protein-containing complex catalytic complex caspase complex peptidase complex endopeptidase complex cytosol perinuclear region of cytoplasm nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
C	IPR001309	Peptidase C14, p20 domain	Domain
C	IPR011600	Peptidase C14, caspase domain	Domain
C	IPR016129	Peptidase family C14A, His active site	Active Site
C	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
C	IPR011029	Death-like domain superfamily	Homologous Superfamily
C	IPR033139	Peptidase family C14A, cysteine active site	Active Site
C	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
C	IPR001315	CARD domain	Domain
C	IPR002398	Peptidase C14 family	Family
A, B	IPR002182	NB-ARC	Domain
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, B	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR054317	CED4, winged-helix domain	Domain
A, B	IPR001315	CARD domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.