8EP2 | pdb_00008ep2

The capsid structure of Aleutian Mink Disease Virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth z]	CPSase_L_D2	e8ep2z1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
Z	CPSase_L_D2	e8ep2Z1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
YA [auth y]	CPSase_L_D2	e8ep2y1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
Y	CPSase_L_D2	e8ep2Y1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
XA [auth x]	CPSase_L_D2	e8ep2x1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
X	CPSase_L_D2	e8ep2X1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
WA [auth w]	CPSase_L_D2	e8ep2w1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
W	CPSase_L_D2	e8ep2W1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
VA [auth v]	CPSase_L_D2	e8ep2v1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
V	CPSase_L_D2	e8ep2V1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
UA [auth u]	CPSase_L_D2	e8ep2u1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
U	CPSase_L_D2	e8ep2U1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
TA [auth t]	CPSase_L_D2	e8ep2t1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
T	CPSase_L_D2	e8ep2T1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
SA [auth s]	CPSase_L_D2	e8ep2s1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
S	CPSase_L_D2	e8ep2S1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
RA [auth r]	CPSase_L_D2	e8ep2r1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
R	CPSase_L_D2	e8ep2R1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
QA [auth q]	CPSase_L_D2	e8ep2q1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
Q	CPSase_L_D2	e8ep2Q1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
PA [auth p]	CPSase_L_D2	e8ep2p1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
P	CPSase_L_D2	e8ep2P1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
OA [auth o]	CPSase_L_D2	e8ep2o1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
O	CPSase_L_D2	e8ep2O1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
NA [auth n]	CPSase_L_D2	e8ep2n1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
N	CPSase_L_D2	e8ep2N1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
MA [auth m]	CPSase_L_D2	e8ep2m1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
M	CPSase_L_D2	e8ep2M1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
LA [auth l]	CPSase_L_D2	e8ep2l1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
L	CPSase_L_D2	e8ep2L1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
KA [auth k]	CPSase_L_D2	e8ep2k1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
K	CPSase_L_D2	e8ep2K1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
JA [auth j]	CPSase_L_D2	e8ep2j1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
J	CPSase_L_D2	e8ep2J1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
IA [auth i]	CPSase_L_D2	e8ep2i1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
I	CPSase_L_D2	e8ep2I1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
HB [auth 8]	CPSase_L_D2	e8ep281	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
HA [auth h]	CPSase_L_D2	e8ep2h1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
H	CPSase_L_D2	e8ep2H1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
GB [auth 7]	CPSase_L_D2	e8ep271	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
GA [auth g]	CPSase_L_D2	e8ep2g1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
G	CPSase_L_D2	e8ep2G1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
FB [auth 6]	CPSase_L_D2	e8ep261	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
FA [auth f]	CPSase_L_D2	e8ep2f1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
F	CPSase_L_D2	e8ep2F1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
EB [auth 5]	CPSase_L_D2	e8ep251	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
EA [auth e]	CPSase_L_D2	e8ep2e1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
E	CPSase_L_D2	e8ep2E1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
DB [auth 4]	CPSase_L_D2	e8ep241	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
DA [auth d]	CPSase_L_D2	e8ep2d1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
D	CPSase_L_D2	e8ep2D1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
CB [auth 3]	CPSase_L_D2	e8ep231	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
CA [auth c]	CPSase_L_D2	e8ep2c1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
C	CPSase_L_D2	e8ep2C1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
BB [auth 2]	CPSase_L_D2	e8ep221	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
BA [auth b]	CPSase_L_D2	e8ep2b1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
B	CPSase_L_D2	e8ep2B1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
AB [auth 1]	CPSase_L_D2	e8ep211	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
AA [auth a]	CPSase_L_D2	e8ep2a1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
A	CPSase_L_D2	e8ep2A1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein VP1	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane disruption of anatomical structure in another organism	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.