8EP2 | pdb_00008ep2

The capsid structure of Aleutian Mink Disease Virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GTP_EFTU_D2	e8ep2A1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
AA [auth a]	GTP_EFTU_D2	e8ep2a1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
AB [auth 1]	GTP_EFTU_D2	e8ep211	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
B	GTP_EFTU_D2	e8ep2B1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
BA [auth b]	GTP_EFTU_D2	e8ep2b1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
BB [auth 2]	GTP_EFTU_D2	e8ep221	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
C	GTP_EFTU_D2	e8ep2C1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
CA [auth c]	GTP_EFTU_D2	e8ep2c1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
CB [auth 3]	GTP_EFTU_D2	e8ep231	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
D	GTP_EFTU_D2	e8ep2D1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
DA [auth d]	GTP_EFTU_D2	e8ep2d1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
DB [auth 4]	GTP_EFTU_D2	e8ep241	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
E	GTP_EFTU_D2	e8ep2E1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
EA [auth e]	GTP_EFTU_D2	e8ep2e1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
EB [auth 5]	GTP_EFTU_D2	e8ep251	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
F	GTP_EFTU_D2	e8ep2F1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
FB [auth 6]	GTP_EFTU_D2	e8ep261	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
G	GTP_EFTU_D2	e8ep2G1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
GA [auth g]	GTP_EFTU_D2	e8ep2g1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
GB [auth 7]	GTP_EFTU_D2	e8ep271	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
H	GTP_EFTU_D2	e8ep2H1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
HA [auth h]	GTP_EFTU_D2	e8ep2h1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
HB [auth 8]	GTP_EFTU_D2	e8ep281	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
IA [auth i]	GTP_EFTU_D2	e8ep2i1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
J	GTP_EFTU_D2	e8ep2J1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
JA [auth j]	GTP_EFTU_D2	e8ep2j1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
K	GTP_EFTU_D2	e8ep2K1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
KA [auth k]	GTP_EFTU_D2	e8ep2k1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
L	GTP_EFTU_D2	e8ep2L1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
LA [auth l]	GTP_EFTU_D2	e8ep2l1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
MA [auth m]	GTP_EFTU_D2	e8ep2m1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
N	GTP_EFTU_D2	e8ep2N1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
NA [auth n]	GTP_EFTU_D2	e8ep2n1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
O	GTP_EFTU_D2	e8ep2O1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
OA [auth o]	GTP_EFTU_D2	e8ep2o1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
P	GTP_EFTU_D2	e8ep2P1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
PA [auth p]	GTP_EFTU_D2	e8ep2p1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
Q	GTP_EFTU_D2	e8ep2Q1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
QA [auth q]	GTP_EFTU_D2	e8ep2q1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
RA [auth r]	GTP_EFTU_D2	e8ep2r1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
S	GTP_EFTU_D2	e8ep2S1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
SA [auth s]	GTP_EFTU_D2	e8ep2s1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
T	GTP_EFTU_D2	e8ep2T1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
TA [auth t]	GTP_EFTU_D2	e8ep2t1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
U	GTP_EFTU_D2	e8ep2U1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
V	GTP_EFTU_D2	e8ep2V1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
VA [auth v]	GTP_EFTU_D2	e8ep2v1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
WA [auth w]	GTP_EFTU_D2	e8ep2w1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
X	GTP_EFTU_D2	e8ep2X1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
XA [auth x]	GTP_EFTU_D2	e8ep2x1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
Y	GTP_EFTU_D2	e8ep2Y1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
YA [auth y]	GTP_EFTU_D2	e8ep2y1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
Z	GTP_EFTU_D2	e8ep2Z1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
ZA [auth z]	GTP_EFTU_D2	e8ep2z1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
W	GTP_EFTU_D2	e8ep2W1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
UA [auth u]	GTP_EFTU_D2	e8ep2u1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
R	GTP_EFTU_D2	e8ep2R1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
M	GTP_EFTU_D2	e8ep2M1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
I	GTP_EFTU_D2	e8ep2I1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)
FA [auth f]	GTP_EFTU_D2	e8ep2f1	A: a/b three-layered sandwiches	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: GTP_EFTU_D2	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein VP1	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane disruption of anatomical structure in another organism	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily