8D7O | pdb_00008d7o

Human Casein kinase 1 delta in complex with phosphorylated human PERIOD2 FASP peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Protein kinase-like (PK-like)	8080849	3000066	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Protein kinase-like (PK-like)	8080849	3000066	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e8d7oB1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Ion_trans	F:	ECOD (20:10:01)
A		e8d7oA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Ion_trans	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (utative)
B	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (utative)
A	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (utative)
A	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Period circadian protein homolog 2 peptide	transcription factor binding transcription coregulator binding transcription corepressor binding protein binding binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription coactivator activity transcription regulator activity transcription factor binding transcription coregulator binding transcription corepressor binding protein binding binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process developmental process multicellular organismal process regulation of multicellular organismal development regulation of developmental process cellular developmental process cell development regulation of neurogenesis regulation of cell differentiation nervous system development regulation of cell development regulation of nervous system development multicellular organism development neurogenesis cell differentiation anatomical structure development regulation of multicellular organismal process system development rhythmic process circadian rhythm regulation of circadian rhythm negative regulation of post-translational protein modification regulation of protein modification process regulation of protein ubiquitination protein ubiquitination negative regulation of protein modification process protein metabolic process negative regulation of protein ubiquitination regulation of protein modification by small protein conjugation or removal protein modification process negative regulation of protein metabolic process negative regulation of protein modification by small protein conjugation or removal regulation of post-translational protein modification regulation of protein metabolic process macromolecule modification post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal response to stimulus response to stress response to ischemia lactate biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process lactate metabolic process small molecule metabolic process monocarboxylic acid metabolic process regulation of tube diameter system process regulation of tube size regulation of system process circulatory system process regulation of blood circulation regulation of vasoconstriction vascular process in circulatory system blood vessel diameter maintenance regulation of biological quality blood circulation vasoconstriction regulation of anatomical structure size negative regulation of circadian rhythm circadian regulation of gene expression fatty acid metabolic process lipid metabolic process negative regulation of cell population proliferation cell population proliferation fat cell proliferation regulation of cell population proliferation regulation of fat cell proliferation negative regulation of fat cell proliferation homeostatic process positive regulation of biological process adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process regulation of localization establishment of protein localization nitrogen compound transport regulation of hormone secretion regulation of protein localization regulation of peptide secretion transport signaling hormone secretion protein localization to extracellular region cell communication localization peptide secretion regulation of secretion by cell secretion by cell signal release intracellular protein localization regulation of peptide hormone secretion regulation of signaling regulation of transport secretion regulation of hormone levels regulation of peptide transport regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell cell-cell signaling regulation of protein transport protein secretion establishment of localization regulation of protein secretion regulation of secretion peptide transport protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization hormone transport regulation of cell communication insulin secretion response to light stimulus entrainment of circadian clock response to external stimulus photoperiodism response to radiation response to abiotic stimulus entrainment of circadian clock by photoperiod monosaccharide metabolic process carbohydrate metabolic process carbohydrate biosynthetic process hexose metabolic process monosaccharide biosynthetic process gluconeogenesis hexose biosynthetic process glucose metabolic process cell cycle regulation of cell cycle transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II sensory organ development eye development animal organ development retina development in camera-type eye visual system development neural retina development camera-type eye development sensory system development import into cell cellular localization carboxylic acid transmembrane transport amino acid transmembrane transport amino acid neurotransmitter reuptake L-amino acid transport L-glutamate import regulation of L-glutamate import across plasma membrane establishment of localization in cell regulation of amino acid transport regulation of amino acid transmembrane transport neurotransmitter reuptake regulation of glutamate uptake involved in transmission of nerve impulse regulation of neurotransmitter uptake L-glutamate import across plasma membrane organic anion transport carboxylic acid transport regulation of neurotransmitter transport glutamate reuptake import across plasma membrane neurotransmitter transport transmembrane transport organic acid transport amino acid transport amine transport acidic amino acid transport regulation of amino acid import across plasma membrane regulation of transmembrane transport regulation of organic acid transport dicarboxylic acid transport L-alpha-amino acid transmembrane transport neurotransmitter uptake amino acid import across plasma membrane regulation of amine transport L-glutamate transmembrane transport glucan biosynthetic process polysaccharide biosynthetic process energy derivation by oxidation of organic compounds glycogen metabolic process generation of precursor metabolites and energy glycogen biosynthetic process polysaccharide metabolic process glucan metabolic process energy reserve metabolic process cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis fat cell differentiation white fat cell differentiation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen protein-containing complex nuclear protein-containing complex transcription regulator complex Cry-Per complex transcription repressor complex cytoplasm cytosol nucleoplasm perinuclear region of cytoplasm
A, B	Casein kinase I isoform delta	protein serine/threonine kinase activity tau-protein kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine kinase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding protein serine/threonine kinase activity tau-protein kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine kinase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cell adhesion molecule binding cadherin binding protein binding	localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization protein localization to microtubule cytoskeleton protein localization to cytoskeleton protein localization to microtubule organizing center protein localization to centrosome rhythmic process regulation of biological process circadian rhythm biological regulation regulation of circadian rhythm localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization protein localization to microtubule cytoskeleton protein localization to cytoskeleton protein localization to microtubule organizing center protein localization to centrosome rhythmic process regulation of biological process circadian rhythm biological regulation regulation of circadian rhythm cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of non-canonical Wnt signaling pathway positive regulation of Wnt signaling pathway non-canonical Wnt signaling pathway signal transduction Wnt signaling pathway positive regulation of cellular process regulation of signaling regulation of Wnt signaling pathway cell surface receptor signaling pathway regulation of non-canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication cellular process positive regulation of signaling import into cell transport endocytosis establishment of localization vesicle-mediated transport establishment of organelle localization vesicle budding from membrane cellular localization vesicle targeting, to, from or within Golgi vesicle targeting cellular component organization vesicle organization cellular component biogenesis cellular component assembly organelle localization establishment of localization in cell protein-containing complex assembly vesicle coating cellular component organization or biogenesis vesicle targeting, rough ER to cis-Golgi membrane organization vesicle localization protein-containing complex organization establishment of vesicle localization intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport organelle organization COPII-coated vesicle budding COPII vesicle coating Golgi vesicle transport positive regulation of proteasomal protein catabolic process catabolic process positive regulation of protein metabolic process proteasome-mediated ubiquitin-dependent protein catabolic process regulation of ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process positive regulation of macromolecule metabolic process protein metabolic process regulation of protein metabolic process primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process metabolic process ubiquitin-dependent protein catabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process regulation of biosynthetic process circadian regulation of gene expression gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process organelle assembly microtubule cytoskeleton organization membraneless organelle assembly spindle assembly microtubule-based process cell cycle cytoskeleton organization chromosome segregation spindle organization cell cycle process plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cilium assembly non-motile cilium assembly cilium organization cell projection assembly protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process protein modification process phosphorus metabolic process protein localization to Golgi apparatus developmental process multicellular organismal process head development dopaminergic neuron differentiation cellular developmental process animal organ development brain development nervous system development generation of neurons multicellular organism development neurogenesis central nervous system neuron differentiation central nervous system development neuron differentiation cell differentiation midbrain development anatomical structure development midbrain dopaminergic neuron differentiation system development regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway positive regulation of canonical Wnt signaling pathway Golgi organization endomembrane system organization protein polymerization microtubule polymerization microtubule polymerization or depolymerization microtubule nucleation supramolecular fiber organization	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection sperm end piece 9+2 motile cilium sperm flagellum motile cilium intracellular organelle intracellular anatomical structure cytoskeleton membraneless organelle membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection sperm end piece 9+2 motile cilium sperm flagellum motile cilium intracellular organelle intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton centrosome microtubule organizing center microtubule cytoskeleton cytoplasm cytosol cell periphery plasma membrane membrane sperm principal piece nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen Golgi apparatus endomembrane system bounding membrane of organelle endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment organelle membrane perinuclear region of cytoplasm spindle polymeric cytoskeletal fiber spindle microtubule supramolecular fiber microtubule supramolecular polymer supramolecular complex ciliary basal body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR013655	PAS fold 3	Domain
C, D	IPR022728	Period circadian-like, C-terminal	Domain
C, D	IPR050760	Period circadian regulator	Family
C, D	IPR000014	PAS domain	Domain
C, D	IPR057310	Period circadian protein homolog PER 1-3, bHLH-like domain	Domain
C, D	IPR048814	Period circadian protein homolog 1-3, PAS-A domain	Domain
C, D	IPR035965	PAS domain superfamily	Homologous Superfamily
A, B	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B	IPR000719	Protein kinase domain	Domain
A, B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B	IPR050235	Casein kinase 1/Serine/threonine-protein kinase-like	Family
A, B	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: O15055	substance withdrawal syndrome chronic myelogenous leukemia, BCR-ABL1 positive advanced sleep phase syndrome 1 Advanced Sleep-Phase Syndrome, Familial invasive ductal breast carcinoma lung cancer psoriasis sleep-wake disorder atypical teratoid rhabdoid tumor breast carcinoma cutaneous lupus erythematosus depressive disorder endometriosis Kleine-Levin syndrome malignant colon neoplasm substance withdrawal syndrome chronic myelogenous leukemia, BCR-ABL1 positive advanced sleep phase syndrome 1 Advanced Sleep-Phase Syndrome, Familial invasive ductal breast carcinoma lung cancer psoriasis sleep-wake disorder atypical teratoid rhabdoid tumor breast carcinoma cutaneous lupus erythematosus depressive disorder endometriosis Kleine-Levin syndrome malignant colon neoplasm osteosarcoma seasonal affective disorder adenoma spina bifida bipolar disorder cystic fibrosis dermatomyositis glioblastoma large cell medulloblastoma ovarian cancer sinusitis subependymal giant cell astrocytoma astrocytic tumor breast cancer cocaine dependence
A, B	Pharos: P48730	advanced sleep phase syndrome 2 Advanced Sleep-Phase Syndrome, Familial renal cell carcinoma atypical teratoid rhabdoid tumor cutaneous lupus erythematosus invasive ductal breast carcinoma major depressive disorder malignant mesothelioma osteosarcoma plasma cell myeloma schizophrenia bipolar disorder gastrointestinal stromal tumor Kleine-Levin syndrome malignant ependymoma advanced sleep phase syndrome 2 Advanced Sleep-Phase Syndrome, Familial renal cell carcinoma atypical teratoid rhabdoid tumor cutaneous lupus erythematosus invasive ductal breast carcinoma major depressive disorder malignant mesothelioma osteosarcoma plasma cell myeloma schizophrenia bipolar disorder gastrointestinal stromal tumor Kleine-Levin syndrome malignant ependymoma ovarian cancer psoriasis tuberculosis astrocytic tumor breast carcinoma glioblastoma lung cancer malignant glioma oligodendroglioma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C, D	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.