8B3Z | pdb_00008b3z

SigE N-terminal Domain


Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF04542Sigma-70 region 2 (Sigma70_r2)Sigma-70 region 2Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA ...Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime [1,2]. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation [1,2].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR007627RNA polymerase sigma-70 region 2Domain
A, B, C, D, E
IPR000943RNA polymerase sigma-70Domain
A, B, C, D, E
IPR050813Bacterial Sigma-70 FactorFamily
A, B, C, D, E
IPR001387Cro/C1-type, helix-turn-helix domainDomain
A, B, C, D, E
IPR013325RNA polymerase sigma factor, region 2Homologous Superfamily
A, B, C, D, E
IPR013324RNA polymerase sigma factor, region 3/4-likeHomologous Superfamily
A, B, C, D, E
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR014200RNA polymerase sigma-E typeFamily
A, B, C, D, E
IPR007630RNA polymerase sigma-70 region 4Domain
A, B, C, D, E
IPR014284RNA polymerase sigma-70-like domainDomain