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 8ZVZ | pdb_00008zvz

Cryo-EM strcuture of Prostaglandin D2 Receptor DP1 activated by BW245C

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth G]SCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070798 3001771 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
E [auth N]Reovirus_L2_GTasee8zvzN1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Reovirus_L2_GTaseECOD (v295.2)
D [auth G]Reovirus_L2_GTasee8zvzG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Reovirus_L2_GTaseECOD (v295.2)
BReovirus_L2_GTasee8zvzB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Reovirus_L2_GTaseECOD (v295.2)
AReovirus_L2_GTasee8zvzA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Reovirus_L2_GTaseECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth N]nanobody Nb35---
D [auth G]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
C [auth D]Soluble cytochrome b562,Prostaglandin D2 receptor
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth G]IPR001770G-protein, gamma subunitFamily
D [auth G]IPR015898G-protein, gamma subunit-like domainDomain
D [auth G]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
C [auth D]IPR000376Prostaglandin D receptorFamily
C [auth D]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
C [auth D]IPR008365Prostanoid receptorFamily
C [auth D]IPR017452GPCR, rhodopsin-like, 7TMDomain
IPR019775WD40 repeat, conserved siteConserved Site
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR001632G-protein beta subunit-like, WD40 repeatsDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR016346G-protein subunit beta 1-5Family
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR001019Guanine nucleotide binding protein, alpha subunitFamily
IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000367G-protein alpha subunit, group SFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
D [auth G]:  P59768
C [auth D]:  Q13258
:  P62873
:  P63092