8ZB4 | pdb_00008zb4

Crystal structure of NudC from Mycobacterium abscessus in complex with NAD

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09296	NADH pyrophosphatase-like rudimentary NUDIX domain (NUDIX-like)	NADH pyrophosphatase-like rudimentary NUDIX domain	The N-terminal domain in NADH pyrophosphatase, which has a rudiment Nudix fold according to SCOP.	Domain
A, B	PF09297	NADH pyrophosphatase zinc ribbon domain (Zn_ribbon_NUD)	NADH pyrophosphatase zinc ribbon domain	This domain is found in between two duplicated NUDIX domains. It has a zinc ribbon structure.	Domain
A, B	PF00293	NUDIX domain (NUDIX)	NUDIX domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	NAD(+) diphosphatase	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding pyrophosphatase activity NADH pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity dinucleotide phosphatase activity hydrolase activity, acting on acid anhydrides catalytic activity cation binding ion binding binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding pyrophosphatase activity NADH pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity dinucleotide phosphatase activity hydrolase activity, acting on acid anhydrides catalytic activity cation binding ion binding metal ion binding	pyridine nucleotide catabolic process catabolic process organophosphate catabolic process nucleoside phosphate catabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process phosphorus metabolic process nucleotide catabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyridine nucleotide catabolic process catabolic process organophosphate catabolic process nucleoside phosphate catabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process phosphorus metabolic process nucleotide catabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process purine nucleotide catabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process NADP+ metabolic process nucleobase-containing compound catabolic process purine-containing compound metabolic process organophosphate metabolic process NADP+ catabolic process metabolic process cellular process pyridine-containing compound catabolic process NAD+ catabolic process NAD+ metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR049734	NADH pyrophosphatase-like, C-terminal domain	Domain
A, B	IPR050241	NAD-capped RNA hydrolase NudC subfamily	Family
A, B	IPR015375	NADH pyrophosphatase-like, N-terminal	Domain
A, B	IPR000086	NUDIX hydrolase domain	Domain
A, B	IPR015376	Zinc ribbon, NADH pyrophosphatase	Domain
A, B	IPR015797	NUDIX hydrolase-like domain superfamily	Homologous Superfamily
A, B	IPR020084	NUDIX hydrolase, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.