8ZAL | pdb_00008zal

EmrAB-TolC MFS-type tripartite multidrug efflux pump EA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyOuter membrane efflux proteins (OEP) 8037933 3000246 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyOuter membrane efflux proteins (OEP) 8037933 3000246 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyOuter membrane efflux proteins (OEP) 8037933 3000246 SCOP2B (2022-06-29)

AMR Gene: CARD Annotation CARD Database Homepage

ChainsAccessionShort NameDescriptionProvenance Source (Version)
ARO:3000074emrBemrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP), nalidixic acid, and thioloactomycin.CARD (4.0.1)

AMR Gene Family: CARD Annotation CARD Database Homepage

ChainsAccessionGene FamilyDrug Class Resistance MachanismProvenance Source (Version)
ARO:0010002major facilitator superfamily (MFS) antibiotic efflux pumpfluoroquinolone antibioticantibiotic effluxCARD (4.0.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07690Major Facilitator Superfamily (MFS_1)Major Facilitator Superfamily- Family
G, H, I
PF02321Outer membrane efflux protein (OEP)Outer membrane efflux protein- Family
A, B, C, D, E
PF25963AAEA-like beta-barrel domain (Beta-barrel_AAEA)AAEA-like beta-barrel domainThis domain is found in the AaeA protein which is a component of the p-hydroxybenzoic acid (pHBA) efflux pump in Escherichia coli [1] and related proteins. AaeA forms an efflux pump with AaeB, which functions to export certain aromatic carboxylic aci ...This domain is found in the AaeA protein which is a component of the p-hydroxybenzoic acid (pHBA) efflux pump in Escherichia coli [1] and related proteins. AaeA forms an efflux pump with AaeB, which functions to export certain aromatic carboxylic acids from the cell. The AaeAB efflux system serves as a 'metabolic relief valve' to alleviate toxic effects of imbalanced metabolism by eliminating specific compounds when they accumulate to high levels in the cell [1]. The domain represented in this entry folds into a six-stranded closed beta-barrel with a greek-key topology which has a structural similarity to the C-terminal domain of alanine racemase. This domain is interrupted by the barrel-sandwich hybrid domain which is inserted after the first beta-strand of the barrel. This model does not include the N-terminal strand.
Domain
A, B, C, D, E
PF25885EMRA, alpha-helical hairpin domain (HH_EMRA)EMRA, alpha-helical hairpin domainThis domain is found in the Multidrug export protein EmrA and related proteins, including its paralogue ErmK. EmrA is a crucial component of the EmrAB-TolC efflux system in Escherichia coli, which plays a significant role in conferring resistance to ...This domain is found in the Multidrug export protein EmrA and related proteins, including its paralogue ErmK. EmrA is a crucial component of the EmrAB-TolC efflux system in Escherichia coli, which plays a significant role in conferring resistance to various antibiotics and toxic compounds [1,2]. This protein bridges the inner membrane transporter EmrB and the outer membrane channel TolC and thus facilitates the export of substances across both membranes.
Domain
A, B, C, D, E
PF25917RND MFP, barrel-sandwich hybrid domain (BSH_RND)RND MFP, barrel-sandwich hybrid domainThis domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. The most characterized MFP AcrA connects the ...This domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. The most characterized MFP AcrA connects the outer membrane factor TolC and the resistance-nodulation-division-type efflux transporter AcrB, which is a major multidrug efflux pump in Escherichia coli [1]. The barrel-sandwich hybrid domain is an important structural feature found in membrane fusion proteins. This domain plays a crucial role in the assembly and function of tripartite drug efflux systems [2]. It is involved in interactions with the other components of the RND pumps.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Multidrug export protein EmrB
G, H, I
Outer membrane protein TolC
A, B, C, D, E
Multidrug export protein EmrA