8Z82 | pdb_00008z82

Photosynthetic LH1-RC-HiPIP complex from the purple bacterium Halorhodospira halophila


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth M]C1-sete8z82M01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: C1-setECOD (v294.2)
KA [auth a]C1-sete8z82a01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: C1-setECOD (v294.2)
XWD40e8z82X1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
TWD40e8z82T1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
PWD40e8z82P1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
L [auth J]WD40e8z82J1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
JA [auth 0]WD40e8z8201 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
H [auth E]WD40e8z82E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
FA [auth 6]WD40e8z8261 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
BA [auth 2]WD40e8z8221 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
WWD40e8z82W1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
SWD40e8z82S1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
OWD40e8z82O1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
K [auth I]WD40e8z82I1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
IA [auth 9]WD40e8z8291 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
G [auth D]WD40e8z82D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
EA [auth 5]WD40e8z8251 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
AA [auth 1]WD40e8z8211 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
ZWD40e8z82Z1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
VWD40e8z82V1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
RWD40e8z82R1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
NWD40e8z82N1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
J [auth G]WD40e8z82G1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
HA [auth 8]WD40e8z8281 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
F [auth B]WD40e8z82B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
DA [auth 4]WD40e8z8241 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
YWD40e8z82Y1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
UWD40e8z82U1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
QWD40e8z82Q1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
M [auth K]WD40e8z82K1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
I [auth F]WD40e8z82F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
GA [auth 7]WD40e8z8271 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
E [auth A]WD40e8z82A1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
CA [auth 3]WD40e8z8231 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
D [auth H]C1-sete8z82H01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: C1-setECOD (v294.2)
B [auth L]C1-sete8z82L01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: C1-setECOD (v294.2)
A [auth C]C1-sete8z82C01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: C1-setECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
PF01355High potential iron-sulfur protein (HIPIP)High potential iron-sulfur proteinDomain
D [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
D [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
B [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
A [auth C]PF02276Photosynthetic reaction centre cytochrome C subunit (CytoC_RC)Photosynthetic reaction centre cytochrome C subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth M]Reaction center protein M chain
KA [auth a]High-potential iron-sulfur protein -
Antenna complex, alpha/beta subunit
Antenna complex, alpha/beta subunit
Antenna complex, alpha/beta subunit
Antenna complex, alpha/beta subunit
D [auth H]Photosynthetic reaction centre, H-chain-
B [auth L]Reaction center protein L chain
A [auth C]Photosynthetic reaction center cytochrome c subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
C [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
C [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
C [auth M]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
KA [auth a]IPR000170High potential iron-sulphur proteinDomain
KA [auth a]IPR006311Twin-arginine translocation pathway, signal sequenceConserved Site
KA [auth a]IPR036369High potential iron-sulphur protein superfamilyHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
D [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
D [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
D [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
D [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
D [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
D [auth H]IPR027275PRC-barrel domainDomain
B [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
B [auth L]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
B [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
A [auth C]IPR036280Multiheme cytochrome superfamilyHomologous Superfamily
A [auth C]IPR023119Multihaem cytochrome, PRC subunit superfamilyHomologous Superfamily
A [auth C]IPR003158Photosynthetic reaction centre, cytochrome c subunitFamily