8Z1C | pdb_00008z1c

Cryo-EM structure of apo Aspergillus terreus glutamate dehydrogenase (AtGDH) in the closed conformation (form 1)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain (ELFV_dehydrog_N)	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain		Domain
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (ELFV_dehydrog)	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	Glutamate dehydrogenase	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity glutamate dehydrogenase [NAD(P)+] activity glutamate dehydrogenase (NADP+) activity oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor catalytic activity	oxoacid metabolic process glutamine family amino acid biosynthetic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process alpha-amino acid metabolic process carboxylic acid biosynthetic process glutamine family amino acid metabolic process glutamate metabolic process small molecule metabolic process dicarboxylic acid biosynthetic process small molecule biosynthetic process dicarboxylic acid metabolic process carboxylic acid metabolic process oxoacid metabolic process glutamine family amino acid biosynthetic process amino acid metabolic process organic acid metabolic process organic acid biosynthetic process alpha-amino acid metabolic process carboxylic acid biosynthetic process glutamine family amino acid metabolic process glutamate metabolic process small molecule metabolic process dicarboxylic acid biosynthetic process small molecule biosynthetic process dicarboxylic acid metabolic process carboxylic acid metabolic process primary metabolic process L-amino acid biosynthetic process L-amino acid metabolic process proteinogenic amino acid metabolic process amino acid biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process metabolic process cellular process glutamate biosynthetic process alpha-amino acid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR006095	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase	Family
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR046346	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Homologous Superfamily
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR006096	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminal	Domain
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR050724	Glutamate/Leucine/Phenylalanine/Valine dehydrogenases	Family
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR006097	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domain	Domain
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR014362	Glutamate dehydrogenase	Family
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR033524	Leu/Phe/Val dehydrogenases active site	Active Site
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], A [auth E], B [auth F], C [auth D], D [auth A], E [auth B], F [auth C]	IPR033922	NAD(P) binding domain of glutamate dehydrogenase	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.