8Z0H | pdb_00008z0h

Crystal structure of 9-mer peptide from ALV-J in complex with BF2*0201

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth K]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8070475 3000071 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8070475 3000071 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8070475 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8070475 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth K]WD40e8z0hK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
F [auth H]WD40e8z0hH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
D [auth E]WD40e8z0hE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
Be8z0hB01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF:ECOD (v294.2)
G [auth J]WD40e8z0hJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
E [auth G]WD40e8z0hG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
C [auth D]WD40e8z0hD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
Ae8z0hA01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF:ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
D [auth E],
F [auth H],
H [auth K]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I,
J [auth C],
K [auth F],
L		Gag protein
B,
D [auth E],
F [auth H],
H [auth K]		Beta-2-microglobulin
A,
C [auth D],
E [auth G],
G [auth J]		MHC class I alpha chain 2-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I,
J [auth C],
K [auth F],
L		IPR004028Retroviral Gag polyprotein, MDomain
I,
J [auth C],
K [auth F],
L		IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
I,
J [auth C],
K [auth F],
L		IPR050195Primate lentivirus group Gag polyprotein-likeDomain
I,
J [auth C],
K [auth F],
L		IPR001995Peptidase A2A, retrovirus, catalyticDomain
I,
J [auth C],
K [auth F],
L		IPR034170Retropepsin-like catalytic domainDomain
I,
J [auth C],
K [auth F],
L		IPR001878Zinc finger, CCHC-typeDomain
I,
J [auth C],
K [auth F],
L		IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
I,
J [auth C],
K [auth F],
L		IPR010999Retroviral matrix proteinHomologous Superfamily
I,
J [auth C],
K [auth F],
L		IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
I,
J [auth C],
K [auth F],
L		IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
I,
J [auth C],
K [auth F],
L		IPR001969Aspartic peptidase, active siteActive Site
I,
J [auth C],
K [auth F],
L		IPR018061RetropepsinsDomain
I,
J [auth C],
K [auth F],
L		IPR008916Retrovirus capsid, C-terminalHomologous Superfamily
B,
D [auth E],
F [auth H],
H [auth K]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B,
D [auth E],
F [auth H],
H [auth K]		IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
B,
D [auth E],
F [auth H],
H [auth K]		IPR003597Immunoglobulin C1-setDomain
B,
D [auth E],
F [auth H],
H [auth K]		IPR015707Beta-2-MicroglobulinFamily
B,
D [auth E],
F [auth H],
H [auth K]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
B,
D [auth E],
F [auth H],
H [auth K]		IPR013783Immunoglobulin-like foldHomologous Superfamily
B,
D [auth E],
F [auth H],
H [auth K]		IPR007110Immunoglobulin-like domainDomain
A,
C [auth D],
E [auth G],
G [auth J]		IPR003597Immunoglobulin C1-setDomain
A,
C [auth D],
E [auth G],
G [auth J]		IPR013783Immunoglobulin-like foldHomologous Superfamily
A,
C [auth D],
E [auth G],
G [auth J]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A,
C [auth D],
E [auth G],
G [auth J]		IPR011161MHC class I-like antigen recognition-likeDomain
A,
C [auth D],
E [auth G],
G [auth J]		IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
A,
C [auth D],
E [auth G],
G [auth J]		IPR007110Immunoglobulin-like domainDomain
A,
C [auth D],
E [auth G],
G [auth J]		IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
A,
C [auth D],
E [auth G],
G [auth J]		IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
A,
C [auth D],
E [auth G],
G [auth J]		IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
A,
C [auth D],
E [auth G],
G [auth J]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site