8YW2 | pdb_00008yw2

Semliki Forest virus viron in complex with VLDLR


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth A]SCOP2B SuperfamilyLDL receptor-like module 8035671 3000728 SCOP2B (2022-06-29)
V [auth H]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
V [auth H]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
VA [auth h]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
VA [auth h]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
ZA [auth m]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
ZA [auth m]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
WA [auth i]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
WA [auth i]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
T [auth F]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
T [auth F]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
S [auth E]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
S [auth E]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
KA [auth W]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
KA [auth W]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
JA [auth V]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
JA [auth V]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
IA [auth U]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
IA [auth U]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
F [auth 5]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
F [auth 5]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
DB [auth q]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
DB [auth q]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
CB [auth p]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
CB [auth p]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
BB [auth o]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
BB [auth o]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
DA [auth P]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
TA [auth f]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
SA [auth e]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
RA [auth d]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
R [auth D]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
P [auth AE]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
O [auth AD]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
N [auth AC]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
LB [auth y]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
KB [auth x]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
HA [auth T]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
EA [auth Q]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
CA [auth O]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
AB [auth n]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth A]PF00057Low-density lipoprotein receptor domain class A (Ldl_recept_a)Low-density lipoprotein receptor domain class A- Repeat
PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
PF01563Alphavirus E3 glycoprotein (Alpha_E3_glycop)Alphavirus E3 glycoprotein- Family
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
PF01563Alphavirus E3 glycoprotein (Alpha_E3_glycop)Alphavirus E3 glycoprotein- Family
PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
PF01563Alphavirus E3 glycoprotein (Alpha_E3_glycop)Alphavirus E3 glycoprotein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
K [auth A]Very low-density lipoprotein receptor
Spike glycoprotein E2
Spike glycoprotein E1
capsid protein, partial
Spike glycoprotein E3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
K [auth A]IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
K [auth A]IPR049883NOTCH1, EGF-like calcium-binding domainDomain
K [auth A]IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
K [auth A]IPR018097EGF-like calcium-binding, conserved siteConserved Site
K [auth A]IPR036055LDL receptor-like superfamilyHomologous Superfamily
K [auth A]IPR000742EGF-like domainDomain
K [auth A]IPR051221Low-density lipoprotein receptor-relatedFamily
K [auth A]IPR000033LDLR class B repeatRepeat
K [auth A]IPR001881EGF-like calcium-binding domainDomain
K [auth A]IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
K [auth A]IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily