Annotations: 8YW1

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Trypsin-like serine proteases	8042286	3000114	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Trypsin-like serine proteases	8042286	3000114	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	Trypsin-like serine proteases	8042286	3000114	SCOP2B (2022-06-29)
O [auth P]	SCOP2B Superfamily	Trypsin-like serine proteases	8042286	3000114	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Trypsin-like serine proteases	8042286	3000114	SCOP2B (2022-06-29)
P [auth Q]	SCOP2B Superfamily	Trypsin-like serine proteases	8042286	3000114	SCOP2B (2022-06-29)
N [auth O]	SCOP2B Superfamily	Trypsin-like serine proteases	8042286	3000114	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	Trypsin-like serine proteases	8042286	3000114	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	LDL receptor-like module	8035671	3000728	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Viral glycoprotein, central and dimerisation domains	8037191	3000293	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	E set domains	8054997	3000070	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	E set domains	8054997	3000070	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Viral glycoprotein, central and dimerisation domains	8037191	3000293	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Viral glycoprotein, central and dimerisation domains	8037191	3000293	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	E set domains	8054997	3000070	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	E set domains	8054997	3000070	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Viral glycoprotein, central and dimerisation domains	8037191	3000293	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Viral glycoprotein, central and dimerisation domains	8037191	3000293	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	E set domains	8054997	3000070	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	E set domains	8054997	3000070	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Viral glycoprotein, central and dimerisation domains	8037191	3000293	SCOP2B (2022-06-29)
R [auth E]	SCOP2B Superfamily	E set domains	8054997	3000070	SCOP2B (2022-06-29)
R [auth E]	SCOP2B Superfamily	Viral glycoprotein, central and dimerisation domains	8037191	3000293	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	E set domains	8054997	3000070	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	Viral glycoprotein, central and dimerisation domains	8037191	3000293	SCOP2B (2022-06-29)

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Lip_C	e8yw1C01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: Lip_C	ECOD (v294.1)

Chains

Family Name

Domain Identifier

Architecture

Possible Homology

Homology

Topology

Family

Provenance Source (Version)

Lip_C

e8yw1C01

A: a/b three-layered sandwiches

X: ATP-grasp_6

H: ATP-grasp_6

T: ATP-grasp_6

F: Lip_C

ECOD (v294.1)

Chains	Accession	Name	Description	Comments	Source
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	PF01563	Alphavirus E3 glycoprotein (Alpha_E3_glycop)	Alphavirus E3 glycoprotein	-	Family
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	PF00944	Alphavirus core protein (Peptidase_S3)	Alphavirus core protein	Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.	Domain
C	PF00057	Low-density lipoprotein receptor domain class A (Ldl_recept_a)	Low-density lipoprotein receptor domain class A	-	Repeat
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	PF00943	Alphavirus E2 glycoprotein (Alpha_E2_glycop)	Alphavirus E2 glycoprotein	-	Family
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	PF01563	Alphavirus E3 glycoprotein (Alpha_E3_glycop)	Alphavirus E3 glycoprotein	-	Family
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	PF00944	Alphavirus core protein (Peptidase_S3)	Alphavirus core protein	Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.	Domain
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	PF01563	Alphavirus E3 glycoprotein (Alpha_E3_glycop)	Alphavirus E3 glycoprotein	-	Family
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	PF01589	Alphavirus E1 glycoprotein (Alpha_E1_glycop)	Alphavirus E1 glycoprotein	-	Family

Chains

Accession

Name

Description

Comments

Source

AA [auth a],
BA [auth b],
CA [auth c],
GA [auth g],
K [auth L],

PF01563

Alphavirus E3 glycoprotein (Alpha_E3_glycop)

Alphavirus E3 glycoprotein

Family

D,
DA [auth d],
EA [auth e],
FA [auth f],
N [auth O],

PF00944

Alphavirus core protein (Peptidase_S3)

Alphavirus core protein

Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.

Chains	Accession	Name	Type
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR000936	Alphavirus E2 glycoprotein	Family
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR000930	Peptidase S3, togavirin	Domain
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR002548	Alphavirus E1 glycoprotein	Domain
AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], AA [auth a], BA [auth b], CA [auth c], GA [auth g], K [auth L], L [auth M], M [auth N], Q [auth S]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR002533	Alphavirus E3 spike glycoprotein	Domain
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR014756	Immunoglobulin E-set	Homologous Superfamily
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR000936	Alphavirus E2 glycoprotein	Family
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR000930	Peptidase S3, togavirin	Domain
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR002548	Alphavirus E1 glycoprotein	Domain
D, DA [auth d], EA [auth e], FA [auth f], N [auth O], D, DA [auth d], EA [auth e], FA [auth f], N [auth O], O [auth P], P [auth Q], T	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
C	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
C	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
C	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat	Repeat
C	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
C	IPR036055	LDL receptor-like superfamily	Homologous Superfamily
C	IPR000742	EGF-like domain	Domain
C	IPR051221	Low-density lipoprotein receptor-related	Family
C	IPR000033	LDLR class B repeat	Repeat
C	IPR001881	EGF-like calcium-binding domain	Domain
C	IPR023415	Low-density lipoprotein (LDL) receptor class A, conserved site	Conserved Site
C	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR002533	Alphavirus E3 spike glycoprotein	Domain
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR014756	Immunoglobulin E-set	Homologous Superfamily
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR000936	Alphavirus E2 glycoprotein	Family
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR000930	Peptidase S3, togavirin	Domain
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR002548	Alphavirus E1 glycoprotein	Domain
B, H [auth I], I [auth J], J [auth K], S [auth R], B, H [auth I], I [auth J], J [auth K], S [auth R], X, Y, Z	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR000936	Alphavirus E2 glycoprotein	Family
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR000930	Peptidase S3, togavirin	Domain
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR002548	Alphavirus E1 glycoprotein	Domain
A, E [auth F], F [auth G], G [auth H], R [auth E], A, E [auth F], F [auth G], G [auth H], R [auth E], U, V, W	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily

8YW1 | pdb_00008yw1

Semliki Forest virus viron in complex with VLDLR

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation