8YVY | pdb_00008yvy

Semliki Forest virus virion

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
P [auth Q]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DLip_Ce8yvyD01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: Lip_CECOD (v294.1)
CLip_Ce8yvyC01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: Lip_CECOD (v294.1)
BLip_Ce8yvyB01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: Lip_CECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D,
N [auth O],
O [auth P],
P [auth Q]		PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
C,
K [auth L],
L [auth M],
M [auth N]		PF01563Alphavirus E3 glycoprotein (Alpha_E3_glycop)Alphavirus E3 glycoprotein- Family
B,
H [auth I],
I [auth J],
J [auth K]		PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
A,
E [auth F],
F [auth G],
G [auth H]		PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D,
N [auth O],
O [auth P],
P [auth Q]		capsid protein
C,
K [auth L],
L [auth M],
M [auth N]		Spike glycoprotein E3
B,
H [auth I],
I [auth J],
J [auth K]		Spike glycoprotein E2
A,
E [auth F],
F [auth G],
G [auth H]		Spike glycoprotein E1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D,
N [auth O],
O [auth P],
P [auth Q]		IPR002533Alphavirus E3 spike glycoproteinDomain
D,
N [auth O],
O [auth P],
P [auth Q]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]		IPR014756Immunoglobulin E-setHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
D,
N [auth O],
O [auth P],
P [auth Q]		IPR009003Peptidase S1, PA clanHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
D,
N [auth O],
O [auth P],
P [auth Q]		IPR000936Alphavirus E2 glycoproteinFamily
D,
N [auth O],
O [auth P],
P [auth Q]		IPR000930Peptidase S3, togavirinDomain
D,
N [auth O],
O [auth P],
P [auth Q]		IPR002548Alphavirus E1 glycoproteinDomain
D,
N [auth O],
O [auth P],
P [auth Q]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]		IPR002533Alphavirus E3 spike glycoproteinDomain
C,
K [auth L],
L [auth M],
M [auth N]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]		IPR014756Immunoglobulin E-setHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C,
K [auth L],
L [auth M],
M [auth N]		IPR009003Peptidase S1, PA clanHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C,
K [auth L],
L [auth M],
M [auth N]		IPR000936Alphavirus E2 glycoproteinFamily
C,
K [auth L],
L [auth M],
M [auth N]		IPR000930Peptidase S3, togavirinDomain
C,
K [auth L],
L [auth M],
M [auth N]		IPR002548Alphavirus E1 glycoproteinDomain
C,
K [auth L],
L [auth M],
M [auth N]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]		IPR002533Alphavirus E3 spike glycoproteinDomain
B,
H [auth I],
I [auth J],
J [auth K]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]		IPR014756Immunoglobulin E-setHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B,
H [auth I],
I [auth J],
J [auth K]		IPR009003Peptidase S1, PA clanHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
B,
H [auth I],
I [auth J],
J [auth K]		IPR000936Alphavirus E2 glycoproteinFamily
B,
H [auth I],
I [auth J],
J [auth K]		IPR000930Peptidase S3, togavirinDomain
B,
H [auth I],
I [auth J],
J [auth K]		IPR002548Alphavirus E1 glycoproteinDomain
B,
H [auth I],
I [auth J],
J [auth K]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]		IPR002533Alphavirus E3 spike glycoproteinDomain
A,
E [auth F],
F [auth G],
G [auth H]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]		IPR014756Immunoglobulin E-setHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]		IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A,
E [auth F],
F [auth G],
G [auth H]		IPR009003Peptidase S1, PA clanHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
A,
E [auth F],
F [auth G],
G [auth H]		IPR000936Alphavirus E2 glycoproteinFamily
A,
E [auth F],
F [auth G],
G [auth H]		IPR000930Peptidase S3, togavirinDomain
A,
E [auth F],
F [auth G],
G [auth H]		IPR002548Alphavirus E1 glycoproteinDomain
A,
E [auth F],
F [auth G],
G [auth H]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily