8YTH | pdb_00008yth

Crystal structures of human IRF2BP2 RING domain in complex with ZBTB16 peptide

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Zinc finger and BTB domain-containing protein 16	DNA binding binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity identical protein binding protein binding transcription factor binding transcription coregulator binding transcription corepressor binding protein domain specific binding DNA binding binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity identical protein binding protein binding transcription factor binding transcription coregulator binding transcription corepressor binding protein domain specific binding angiotensin receptor binding type 2 angiotensin receptor binding signaling receptor binding G protein-coupled receptor binding DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription repressor activity sequence-specific DNA binding double-stranded DNA binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein homodimerization activity protein dimerization activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	developmental process multicellular organism development multicellular organismal process skeletal system development connective tissue development anatomical structure development animal organ development tissue development cartilage development system development central nervous system development nervous system development cell population proliferation cellular process developmental process multicellular organism development multicellular organismal process skeletal system development connective tissue development anatomical structure development animal organ development tissue development cartilage development system development central nervous system development nervous system development cell population proliferation cellular process mesonephros development kidney development renal system development apoptotic process cell death programmed cell death regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process cellular developmental process hemopoiesis cell differentiation cell development primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal embryonic hindlimb morphogenesis limb development appendage development embryonic limb morphogenesis embryonic morphogenesis hindlimb morphogenesis embryonic appendage morphogenesis embryo development anatomical structure morphogenesis appendage morphogenesis limb morphogenesis spermatogenesis sexual reproduction stem cell division reproductive process multicellular organismal reproductive process cellular process involved in reproduction in multicellular organism developmental process involved in reproduction asymmetric cell division germ-line stem cell division male gamete generation gamete generation male germ-line stem cell asymmetric division germ cell development cell division asymmetric stem cell division germline stem cell asymmetric division negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process fat cell differentiation positive regulation of fat cell differentiation regulation of developmental process regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation regulation of fat cell differentiation myeloid cell differentiation regulation of cartilage development regulation of multicellular organismal development positive regulation of multicellular organismal process positive regulation of cartilage development regulation of multicellular organismal process regulation of chondrocyte differentiation positive regulation of chondrocyte differentiation chondrocyte differentiation bone maturation developmental maturation ossification anatomical structure maturation ossification involved in bone maturation animal organ maturation bone development negative regulation of cell population proliferation regulation of cell population proliferation regulation of cell development negative regulation of cell differentiation regulation of immune system process negative regulation of developmental process regulation of myeloid cell differentiation negative regulation of myeloid cell differentiation immune system process regulation of hemopoiesis regulation of leukocyte differentiation regulation of leukocyte activation regulation of alpha-beta T cell activation regulation of cell activation mononuclear cell differentiation lymphocyte differentiation positive regulation of T cell differentiation positive regulation of cell activation T cell activation positive regulation of leukocyte activation alpha-beta T cell activation T cell differentiation positive regulation of immune system process positive regulation of T cell activation positive regulation of cell development positive regulation of alpha-beta T cell activation regulation of leukocyte cell-cell adhesion leukocyte differentiation positive regulation of alpha-beta T cell differentiation positive regulation of NK T cell differentiation positive regulation of leukocyte cell-cell adhesion regulation of alpha-beta T cell differentiation lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation alpha-beta T cell differentiation cell adhesion cell-cell adhesion positive regulation of hemopoiesis NK T cell differentiation regulation of cell-cell adhesion regulation of lymphocyte differentiation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation positive regulation of leukocyte differentiation regulation of NK T cell differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of ossification regulation of ossification forelimb morphogenesis embryonic pattern specification pattern specification process anterior/posterior pattern specification regionalization localization protein localization to organelle macromolecule localization protein localization to nucleus intracellular protein localization embryonic digit morphogenesis	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cytoplasm cytosol male germ cell nucleus germ cell nucleus protein-containing complex transcription regulator complex transcription repressor complex PML body
A	Interferon regulatory factor 2-binding protein 2	transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process developmental process multicellular organismal process cellular developmental process immature B cell differentiation hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development leukocyte differentiation	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR013087	Zinc finger C2H2-type	Domain
B	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
B	IPR036236	Zinc finger C2H2 superfamily	Homologous Superfamily
B	IPR000210	BTB/POZ domain	Domain
A	IPR022750	Interferon regulatory factor 2-binding protein 1/2-like, zinc finger	Domain
A	IPR044882	Interferon regulatory factor 2-binding protein 1/2, C3HC4-type RING finger superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q05516	acute promyelocytic leukemia skeletal defects, genital hypoplasia, and intellectual disability Neoplasm Invasiveness prostate cancer intellectual disability major depressive disorder malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous carcinoma acute myeloid leukemia Parkinson disease attention deficit hyperactivity disorder, inattentive type brain glioma cancer ductal breast carcinoma in situ invasive ductal breast carcinoma acute promyelocytic leukemia skeletal defects, genital hypoplasia, and intellectual disability Neoplasm Invasiveness prostate cancer intellectual disability major depressive disorder malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous carcinoma acute myeloid leukemia Parkinson disease attention deficit hyperactivity disorder, inattentive type brain glioma cancer ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer malignant ependymoma medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer atypical teratoid rhabdoid tumor primitive neuroectodermal tumor breast cancer psoriasis cutaneous lupus erythematosus subependymal giant cell astrocytoma glioblastoma large cell medulloblastoma lymphoplasmacytic lymphoma malignant glioma myeloid leukemia osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atopic eczema polycystic ovary syndrome B-cell chronic lymphocytic leukemia breast carcinoma sinusitis cystic fibrosis lung adenocarcinoma
A	Pharos: Q7Z5L9	acute promyelocytic leukemia atypical teratoid rhabdoid tumor immunodeficiency, common variable, 14 malignant ependymoma medulloblastoma ovarian cancer primitive neuroectodermal tumor Alzheimer disease breast carcinoma juvenile dermatomyositis malignant glioma oligodendroglioma pancreatic ductal adenocarcinoma psoriasis astrocytic tumor acute promyelocytic leukemia atypical teratoid rhabdoid tumor immunodeficiency, common variable, 14 malignant ependymoma medulloblastoma ovarian cancer primitive neuroectodermal tumor Alzheimer disease breast carcinoma juvenile dermatomyositis malignant glioma oligodendroglioma pancreatic ductal adenocarcinoma psoriasis astrocytic tumor glioblastoma large cell medulloblastoma malignant pancreatic neoplasm osteosarcoma Pick disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.