Annotations: 8YRE

Crystal structure of Arabidopsis VTC1-KJC2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Fe_hyd_SSU	e8yreF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
E	Fe_hyd_SSU	e8yreE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
D	DncV-like_NTFase	e8yreD01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DncV-like_NTFase	ECOD (v295.2)
C	Fe_hyd_SSU	e8yreC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
B	Fe_hyd_SSU	e8yreB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
A	DncV-like_NTFase	e8yreA01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DncV-like_NTFase	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D, E, F	PF00483	Nucleotidyl transferase (NTP_transferase)	Nucleotidyl transferase	-	Family
D, E, F	PF25087	GMPPB C-terminal domain (GMPPB_C)	GMPPB C-terminal domain	-	Repeat
A, B, C	PF00483	Nucleotidyl transferase (NTP_transferase)	Nucleotidyl transferase	-	Family
A, B, C	PF25087	GMPPB C-terminal domain (GMPPB_C)	GMPPB C-terminal domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, E, F	Mannose-1-phosphate guanylyltransferase 1	guanylyltransferase activity mannose-1-phosphate guanylyltransferase (GTP) activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding guanylyltransferase activity mannose-1-phosphate guanylyltransferase (GTP) activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	response to stimulus response to chemical response to ammonium ion response to nitrogen compound nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process nucleotide-sugar metabolic process carbohydrate derivative metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleobase-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process response to stimulus response to chemical response to ammonium ion response to nitrogen compound nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process nucleotide-sugar metabolic process carbohydrate derivative metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleobase-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process nucleoside phosphate biosynthetic process GDP-mannose biosynthetic process metabolic process cellular process small molecule metabolic process nucleotide-sugar biosynthetic process phosphorus metabolic process GDP-mannose metabolic process response to lipid response to jasmonic acid response to hormone response to fatty acid response to endogenous stimulus response to oxygen-containing compound response to oxidative stress response to ozone response to stress response to reactive oxygen species carbohydrate metabolic process glucan biosynthetic process beta-glucan metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process macromolecule biosynthetic process beta-glucan biosynthetic process polysaccharide metabolic process glucan metabolic process cellulose biosynthetic process macromolecule metabolic process cellulose metabolic process monosaccharide metabolic process water-soluble vitamin biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process vitamin biosynthetic process monosaccharide biosynthetic process carboxylic acid biosynthetic process vitamin metabolic process L-ascorbic acid metabolic process lactone metabolic process lactone biosynthetic process L-ascorbic acid biosynthetic process response to heat response to abiotic stimulus response to temperature stimulus defense response to bacterium biological process involved in interspecies interaction between organisms response to other organism defense response response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus response to osmotic stress response to salt stress	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A, B, C	ADP-glucose pyrophosphorylase family protein	-	monosaccharide metabolic process regulation of cellular process oxoacid metabolic process ketone metabolic process vitamin biosynthetic process carboxylic acid biosynthetic process L-ascorbic acid metabolic process regulation of primary metabolic process regulation of small molecule metabolic process lactone biosynthetic process small molecule metabolic process regulation of vitamin metabolic process regulation of carbohydrate metabolic process regulation of biosynthetic process monosaccharide metabolic process regulation of cellular process oxoacid metabolic process ketone metabolic process vitamin biosynthetic process carboxylic acid biosynthetic process L-ascorbic acid metabolic process regulation of primary metabolic process regulation of small molecule metabolic process lactone biosynthetic process small molecule metabolic process regulation of vitamin metabolic process regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process water-soluble vitamin biosynthetic process small molecule biosynthetic process regulation of L-ascorbic acid biosynthetic process carbohydrate biosynthetic process biological regulation carboxylic acid metabolic process primary metabolic process monosaccharide biosynthetic process vitamin metabolic process regulation of ketone metabolic process biosynthetic process lactone metabolic process metabolic process cellular process regulation of carbohydrate biosynthetic process L-ascorbic acid biosynthetic process regulation of metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle plastid organelle intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, E, F	IPR045233	Mannose-1-phosphate guanyltransferase, N-terminal domain	Domain
D, E, F	IPR050486	Mannose-1-phosphate guanyltransferase	Family
D, E, F	IPR056729	Mannose-1-phosphate guanyltransferase, C-terminal domain	Domain
D, E, F	IPR005835	Nucleotidyl transferase domain	Domain
D, E, F	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily
A, B, C	IPR005835	Nucleotidyl transferase domain	Domain
A, B, C	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily
A, B, C	IPR050486	Mannose-1-phosphate guanyltransferase	Family
A, B, C	IPR056729	Mannose-1-phosphate guanyltransferase, C-terminal domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8YRE | pdb_00008yre

Crystal structure of Arabidopsis VTC1-KJC2

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage