8YE4 | pdb_00008ye4

The complex of TCR NYN-I and HLA-A24 bound to SARS-CoV-2 Spike448-456 peptide NYNYLYRLF

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth D]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
H, J
TR NYN-I TR-BETA-2 Homo sapiens (human), Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) TRBV6-1*01, TRBJ2-7*01, TRBJ2-7*02, TRBC2*01, TRBC2*02 V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 TR TR-ALPHA_BETA-2 IMGT (202549-0)
G, I
TR NYN-I TR-ALPHA Homo sapiens (human), Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) TRAV12-1*01, TRAJ28*01, TRAC*01 V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA TR TR-ALPHA_BETA-2 IMGT (202549-0)
B,
E [auth D]		MH1 HLA A*2301 B2M Homo sapiens (human), Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) B2M*01, B2M*02 C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202549-0)
A,
D [auth C]		MH1 HLA A*2301 I-ALPHA Homo sapiens (human), Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) HLA-A*2301, HLA-A*2402, HLA-A*2403, HLA-A*2410, HLA-A*2422, HLA-A*2426, HLA-A*2427, HLA-A*2454, HLA-A*2453, HLA-A*2451, HLA-A*2479, HLA-A*2317 G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202549-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
E [auth D]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
A,
D [auth C]		PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
A,
D [auth C]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H, J
TCR NYN-I beta chain---
G, I
TCR NYN-I alpha chain---
C [auth E],
F		Spike protein S1
B,
E [auth D]		Beta-2-microglobulin
A,
D [auth C]		MHC class I antigen precusor-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth E],
F		IPR044873Spike glycoprotein S2, coronavirus, heptad repeat 1Domain
C [auth E],
F		IPR044366Spike (S) protein S1 subunit, receptor-binding domain, SARS-CoV-2Domain
C [auth E],
F		IPR018548Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirusDomain
C [auth E],
F		IPR044341Spike (S) protein S1 subunit, N-terminal domain, SARS-CoV-likeDomain
C [auth E],
F		IPR032500Spike glycoprotein S1, N-terminal domain, betacoronavirus-likeDomain
C [auth E],
F		IPR042578Spike glycoprotein, betacoronavirusFamily
C [auth E],
F		IPR036326Spike S1 subunit, receptor binding domain superfamily, betacoronavirusHomologous Superfamily
C [auth E],
F		IPR043002Spike glycoprotein, N-terminal domain superfamilyHomologous Superfamily
C [auth E],
F		IPR044874Spike glycoprotein S2, coronavirus, heptad repeat 2Domain
C [auth E],
F		IPR043473Spike glycoprotein S2 superfamily, coronavirusHomologous Superfamily
C [auth E],
F		IPR043607Coronavirus spike glycoprotein S1, C-terminalDomain
C [auth E],
F		IPR002552Spike glycoprotein S2, coronavirusDomain
B,
E [auth D]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B,
E [auth D]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
B,
E [auth D]		IPR013783Immunoglobulin-like foldHomologous Superfamily
B,
E [auth D]		IPR007110Immunoglobulin-like domainDomain
B,
E [auth D]		IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
B,
E [auth D]		IPR003597Immunoglobulin C1-setDomain
B,
E [auth D]		IPR015707Beta-2-MicroglobulinFamily
A,
D [auth C]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A,
D [auth C]		IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
A,
D [auth C]		IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
A,
D [auth C]		IPR003597Immunoglobulin C1-setDomain
A,
D [auth C]		IPR013783Immunoglobulin-like foldHomologous Superfamily
A,
D [auth C]		IPR011161MHC class I-like antigen recognition-likeDomain
A,
D [auth C]		IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
A,
D [auth C]		IPR007110Immunoglobulin-like domainDomain
A,
D [auth C]		IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
A,
D [auth C]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B,
E [auth D]		Pharos:  P61769