Annotations: 8YAB

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth E]	PF00928	Adaptor complexes medium subunit family (Adap_comp_sub)	Adaptor complexes medium subunit family	-	Family
C	PF15001	AP-5 complex subunit sigma-1 (AP-5_subunit_s1)	AP-5 complex subunit sigma-1	-	Family
B	PF21587	AP-5 complex subunit beta-1, N-terminal (AP5B1_N)	AP-5 complex subunit beta-1, N-terminal	-	Repeat
B	PF21588	AP5B1, middle domain (AP5B1_middle)	AP5B1, middle domain	-	Repeat
A	PF25154	AP-5 complex subunit zeta-1, C-terminal TPR repeats (TPR_AP5Z1_C)	AP-5 complex subunit zeta-1, C-terminal TPR repeats	-	Repeat
A	PF25153	AP-5 complex subunit zeta-1, TPR repeats (TPR_AP5Z1)	AP-5 complex subunit zeta-1, TPR repeats	-	Repeat
A	PF14764	AP-5 complex subunit, vesicle trafficking (SPG48)	AP-5 complex subunit, vesicle trafficking	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth D]	Spatacsin	protein binding binding kinase binding enzyme binding protein kinase binding	developmental process myotube cell development skeletal muscle fiber development cellular developmental process skeletal muscle tissue development animal organ development cell development tissue development muscle cell differentiation myotube differentiation striated muscle tissue development muscle structure development skeletal muscle organ development striated muscle cell development muscle cell development developmental process myotube cell development skeletal muscle fiber development cellular developmental process skeletal muscle tissue development animal organ development cell development tissue development muscle cell differentiation myotube differentiation striated muscle tissue development muscle structure development skeletal muscle organ development striated muscle cell development muscle cell development cell differentiation anatomical structure development cellular process muscle tissue development muscle organ development striated muscle cell differentiation neuron apoptotic process apoptotic process motor neuron apoptotic process cell death programmed cell death establishment of organelle localization vesicle cytoskeletal trafficking vesicle localization cellular localization organelle transport along microtubule transport establishment of vesicle localization intracellular transport establishment of localization vesicle transport along microtubule localization organelle localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process axo-dendritic transport cellular component organization cell junction organization neuromuscular junction development synapse organization cellular component organization or biogenesis synaptic vesicle localization synaptic vesicle transport catabolic process metabolic process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process behavior multicellular organismal process system process learning or memory nervous system process cognition memory establishment of protein localization nucleocytoplasmic transport nuclear transport protein localization to nucleus import into nucleus establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle protein import into nucleus intracellular protein localization intracellular protein transport locomotory behavior walking behavior lysosome organization organelle organization vacuole organization lytic vacuole organization import into cell membrane fusion organelle membrane fusion phagolysosome assembly involved in apoptotic cell clearance vesicle-mediated transport cellular component biogenesis vesicle organization cellular component assembly phagolysosome assembly phagocytosis apoptotic cell clearance membrane organization organelle assembly phagosome-lysosome fusion phagosome-lysosome fusion involved in apoptotic cell clearance phagosome maturation phagosome maturation involved in apoptotic cell clearance organelle fusion endocytosis vesicle fusion axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis system development plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development regulation of store-operated calcium entry regulation of calcium ion transport regulation of localization regulation of biological process regulation of transport regulation of monoatomic ion transport biological regulation calcium ion transport metal ion transport store-operated calcium entry monoatomic ion transport monoatomic cation transport regulation of metal ion transport lipid localization cholesterol transport lipid transport sterol transport organic hydroxy compound transport cholesterol efflux trans-synaptic signaling synaptic signaling signaling anterograde trans-synaptic signaling cell-cell signaling chemical synaptic transmission cell communication motor behavior axon extension developmental growth cell growth neuron projection extension developmental cell growth growth developmental growth involved in morphogenesis localization within membrane central nervous system neuron development central nervous system neuron differentiation central nervous system projection neuron axonogenesis central nervous system neuron axonogenesis central nervous system development corticospinal tract morphogenesis macroautophagy autophagy autophagosome organization process utilizing autophagic mechanism	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm cytosol cell periphery plasma membrane membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection cytoplasmic vesicle intracellular vesicle vesicle vacuolar membrane lytic vacuole vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane lysosome synapse cell junction axon endoplasmic reticulum endomembrane system
D [auth E]	AP-5 complex subunit mu-1	-	localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport establishment of protein localization protein transport macromolecule localization intracellular protein localization	membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane organelle membrane lysosome cytosol endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome vesicle endosome membrane late endosome membrane cytoplasmic vesicle membrane vesicle membrane
C	AP-5 complex subunit sigma-1	-	localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process localization cellular localization transport establishment of localization in cell cellular process intracellular transport establishment of localization vesicle-mediated transport endosomal transport cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process macromolecule metabolic process double-strand break repair via homologous recombination DNA repair establishment of protein localization protein transport macromolecule localization intracellular protein localization	membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane organelle membrane lysosome cytosol endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome vesicle endosome membrane late endosome membrane cytoplasmic vesicle membrane vesicle membrane nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
B	AP-5 complex subunit beta-1	-	localization transport cellular process establishment of localization vesicle-mediated transport cellular localization establishment of localization in cell intracellular transport endosomal transport establishment of protein localization protein transport macromolecule localization intracellular protein localization	membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex vacuolar membrane membrane-bounded organelle lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane organelle membrane lysosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome vesicle
A	AP-5 complex subunit zeta-1	-	cellular localization transport intracellular transport late endosome to Golgi transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process Golgi vesicle transport establishment of protein localization cellular localization transport intracellular transport late endosome to Golgi transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process Golgi vesicle transport establishment of protein localization protein transport macromolecule localization intracellular protein localization intracellular protein transport biosynthetic process metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair autophagosome assembly catabolic process organelle assembly vacuole organization macroautophagy autophagy autophagosome organization cellular component biogenesis cellular component organization organelle organization cellular component assembly cellular component organization or biogenesis process utilizing autophagic mechanism protein catabolic process in the vacuole lysosomal protein catabolic process protein catabolic process protein metabolic process macromolecule catabolic process developmental process multicellular organismal process plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development nervous system development axon development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development anatomical structure development system development Golgi organization endomembrane system organization lysosome organization lytic vacuole organization	membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle membrane coat protein-containing complex cellular anatomical structure intracellular anatomical structure AP-type membrane coat adaptor complex membrane membrane protein complex cytoplasm coated membrane AP-5 adaptor complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome vesicle lytic vacuole vacuole lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth D]	IPR028107	Spatacsin, C-terminal domain	Domain
E [auth D]	IPR028103	Spatacsin	Family
D [auth E]	IPR039591	AP-5 complex subunit mu-1	Family
D [auth E]	IPR036168	AP-2 complex subunit mu, C-terminal superfamily	Homologous Superfamily
D [auth E]	IPR028565	Mu homology domain	Domain
C	IPR029392	AP-5 complex subunit sigma-1	Family
B	IPR048979	AP5B1, middle domain	Domain
B	IPR048980	AP-5 complex subunit beta-1, beta-barrel domain	Domain
B	IPR048978	AP-5 complex subunit beta-1, N-terminal domain	Domain
B	IPR038741	AP-5 complex subunit beta-1	Family
B	IPR048981	AP5B1, C-terminal domain	Domain
A	IPR056857	AP-5 complex subunit zeta-1, N-terminal TPR domain	Domain
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR055450	AP-5 complex subunit zeta-1, ARM repeats domain	Domain
A	IPR056856	AP-5 complex subunit zeta-1, C-terminal TPR domain	Domain
A	IPR028222	AP-5 complex subunit zeta-1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth D]	Pharos: Q96JI7	amyotrophic lateral sclerosis type 5 Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease axonal type 2X amyotrophic lateral sclerosis hereditary spastic paraplegia 11 peripheral neuropathy hereditary spastic paraplegia juvenile amyotrophic lateral sclerosis Spastic paraplegia 11, autosomal recessive paraplegia lymphoplasmacytic lymphoma neurodegenerative disease Parkinson disease juvenile dermatomyositis motor peripheral neuropathy amyotrophic lateral sclerosis type 5 Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease axonal type 2X amyotrophic lateral sclerosis hereditary spastic paraplegia 11 peripheral neuropathy hereditary spastic paraplegia juvenile amyotrophic lateral sclerosis Spastic paraplegia 11, autosomal recessive paraplegia lymphoplasmacytic lymphoma neurodegenerative disease Parkinson disease juvenile dermatomyositis motor peripheral neuropathy ovarian cancer peripheral nervous system disease astrocytic tumor dermatomyositis intellectual disability leukodystrophy
C	Pharos: Q9NUS5	large cell medulloblastoma medulloblastoma
B	Pharos: Q2VPB7	acne breast carcinoma psoriasis allergic rhinitis chronic kidney disease skin basal cell carcinoma atopic eczema osteosarcoma systemic lupus erythematosus

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.