8Y77 | pdb_00008y77

Crystal structure of the complex of SAMD1-SAM and L3MBTL3-SAM domains

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00536	SAM domain (Sterile alpha motif) (SAM_1)	SAM domain (Sterile alpha motif)	It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module ...	It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains.	Domain
B	PF00536	SAM domain (Sterile alpha motif) (SAM_1)	SAM domain (Sterile alpha motif)	It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module ...	It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Sterile alpha motif domain-containing protein 1	DNA binding binding nucleic acid binding lipoprotein particle binding protein-containing complex binding protein-lipid complex binding low-density lipoprotein particle binding chromatin binding	developmental process foam cell differentiation cellular developmental process cell differentiation cellular process regulation of cellular process regulation of cellular component organization positive regulation of biological process negative regulation of biological process RNA metabolic process negative regulation of chromatin organization positive regulation of macromolecule biosynthetic process positive regulation of gene expression, epigenetic cellular component organization developmental process foam cell differentiation cellular developmental process cell differentiation cellular process regulation of cellular process regulation of cellular component organization positive regulation of biological process negative regulation of biological process RNA metabolic process negative regulation of chromatin organization positive regulation of macromolecule biosynthetic process positive regulation of gene expression, epigenetic cellular component organization RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II positive regulation of biosynthetic process chromatin organization negative regulation of cellular process chromatin remodeling positive regulation of macromolecule metabolic process cellular component organization or biogenesis positive regulation of cellular process transcription initiation at RNA polymerase II promoter regulation of biosynthetic process regulation of biological process regulation of chromatin organization negative regulation of cellular component organization epigenetic regulation of gene expression biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation regulation of gene expression negative regulation of transcription initiation-coupled chromatin remodeling biosynthetic process positive regulation of gene expression transcription initiation-coupled chromatin remodeling regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process lipoprotein modification lipoprotein metabolic process lipid modification lipoprotein oxidation protein metabolic process lipid oxidation lipoprotein lipid oxidation lipid metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome extracellular region extracellular space membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B	Lethal(3)malignant brain tumor-like protein 3	protein binding binding histone binding chromatin binding modification-dependent protein binding methylation-dependent protein binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process developmental process myeloid leukocyte differentiation cellular developmental process hemopoiesis macrophage differentiation cell development mononuclear cell differentiation myeloid cell differentiation cell differentiation anatomical structure development leukocyte differentiation catabolic process positive regulation of protein metabolic process proteolysis involved in protein catabolic process positive regulation of biological process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of protein metabolic process protein catabolic process regulation of catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process modification-dependent protein catabolic process positive regulation of proteolysis ubiquitin-dependent protein catabolic process regulation of cellular component organization negative regulation of chromatin organization positive regulation of macromolecule biosynthetic process positive regulation of gene expression, epigenetic cellular component organization transcription by RNA polymerase II positive regulation of biosynthetic process chromatin organization chromatin remodeling cellular component organization or biogenesis transcription initiation at RNA polymerase II promoter regulation of chromatin organization negative regulation of cellular component organization epigenetic regulation of gene expression DNA-templated transcription initiation negative regulation of transcription initiation-coupled chromatin remodeling positive regulation of gene expression transcription initiation-coupled chromatin remodeling granulocyte differentiation multicellular organismal process erythrocyte development homeostatic process erythrocyte maturation developmental maturation erythrocyte differentiation multicellular organismal-level homeostasis anatomical structure maturation immune system process myeloid cell development homeostasis of number of cells cell maturation myeloid cell homeostasis erythrocyte homeostasis	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A	IPR056983	SAMD1-like, small helical domain	Domain
A	IPR048589	SAM domain-containing protein 1-like, WH domain	Domain
A	IPR001660	Sterile alpha motif domain	Domain
B	IPR004092	Mbt repeat	Repeat
B	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
B	IPR002515	Zinc finger, C2H2C-type	Repeat
B	IPR050548	Polycomb group and chromatin remodeling factors	Family
B	IPR001660	Sterile alpha motif domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q6SPF0	atypical teratoid rhabdoid tumor medulloblastoma glioblastoma primitive neuroectodermal tumor large cell medulloblastoma
B	Pharos: Q96JM7	medulloblastoma adult medulloblastoma childhood medulloblastoma melanotic medulloblastoma breast cancer breast carcinoma medullomyoblastoma with myogenic differentiation gastric carcinoma pituitary cancer desmoplastic/nodular medulloblastoma non-alcoholic fatty liver disease swine influenza estrogen-receptor negative breast cancer ovarian cancer tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.