8Y2G | pdb_00008y2g

Cryo-EM structure of human dopamine transporter in complex with methylphenidate

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Levi_coat	e8y2gA01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: Levi_coat	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00209	Sodium:neurotransmitter symporter family (SNF)	Sodium:neurotransmitter symporter family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Sodium-dependent dopamine transporter	binding amine binding monoatomic cation transmembrane transporter activity monoatomic anion transmembrane transporter activity chloride transmembrane transporter activity solute:sodium symporter activity solute:monoatomic cation symporter activity monoatomic anion:sodium symporter activity monoamine transmembrane transporter activity sodium ion transmembrane transporter activity sodium:chloride symporter activity monoatomic anion:monoatomic cation symporter activity secondary active transmembrane transporter activity chloride:monoatomic cation symporter activity binding amine binding monoatomic cation transmembrane transporter activity monoatomic anion transmembrane transporter activity chloride transmembrane transporter activity solute:sodium symporter activity solute:monoatomic cation symporter activity monoatomic anion:sodium symporter activity monoamine transmembrane transporter activity sodium ion transmembrane transporter activity sodium:chloride symporter activity monoatomic anion:monoatomic cation symporter activity secondary active transmembrane transporter activity chloride:monoatomic cation symporter activity active transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity symporter activity dopamine:sodium symporter activity norepinephrine:sodium symporter activity cation binding ion binding catecholamine binding dopamine binding small molecule binding protein-containing complex binding metal ion binding protein binding signaling receptor binding protein phosphatase binding phosphatase binding enzyme binding protein phosphatase 2A binding neurotransmitter transmembrane transporter activity protease binding heterocyclic compound binding	localization transport neurotransmitter transport establishment of localization response to stimulus response to chemical response to xenobiotic stimulus developmental process multicellular organismal process head development forebrain development endocrine system development pituitary gland development gland development localization transport neurotransmitter transport establishment of localization response to stimulus response to chemical response to xenobiotic stimulus developmental process multicellular organismal process head development forebrain development endocrine system development pituitary gland development gland development animal organ development brain development diencephalon development nervous system development multicellular organism development central nervous system development anatomical structure development adenohypophysis development system development regulation of biological process regulation of cellular process regulation of amine metabolic process biological regulation dopamine metabolic process primary metabolic process catechol-containing compound metabolic process regulation of primary metabolic process amine metabolic process catecholamine metabolic process phenol-containing compound metabolic process metabolic process cellular process regulation of catecholamine metabolic process regulation of metabolic process biogenic amine metabolic process regulation of dopamine metabolic process monoamine transport nitrogen compound transport system process nervous system process cognition response to metal ion response to iron ion biogenic amine biosynthetic process biosynthetic process amine biosynthetic process dopamine biosynthetic process catecholamine biosynthetic process phenol-containing compound biosynthetic process catechol-containing compound biosynthetic process startle response regulation of response to external stimulus neuromuscular process negative regulation of response to stimulus negative regulation of biological process prepulse inhibition response to external stimulus regulation of response to stimulus negative regulation of response to external stimulus regulation of body fluid levels secretion mammary gland development body fluid secretion lactation regulation of biological quality response to organophosphorus response to oxygen-containing compound response to nitrogen compound response to purine-containing compound response to cAMP behavior locomotory behavior sensory perception of chemical stimulus sensory perception sensory perception of smell sensory organ development eye development visual system development anatomical structure regression anatomical structure morphogenesis hyaloid vascular plexus regression camera-type eye development sensory system development response to alcohol response to ethanol monoatomic ion transmembrane transport sodium ion transmembrane transport metal ion transport monoatomic cation transmembrane transport transmembrane transport monoatomic ion transport monoatomic cation transport sodium ion transport catecholamine transport organic hydroxy compound transport dopamine uptake dopamine transport catecholamine uptake regulation of multicellular organism growth regulation of growth regulation of developmental growth regulation of developmental process developmental growth growth positive regulation of biological process positive regulation of multicellular organism growth positive regulation of developmental process multicellular organism growth positive regulation of growth positive regulation of multicellular organismal process regulation of multicellular organismal process positive regulation of developmental growth amino acid transport import into cell cellular localization signaling cell communication dopamine uptake involved in synaptic transmission synaptic signaling establishment of localization in cell neurotransmitter reuptake trans-synaptic signaling cell-cell signaling chemical synaptic transmission anterograde trans-synaptic signaling neurotransmitter uptake synaptic transmission, dopaminergic response to nicotine catecholamine catabolic process catabolic process catechol-containing compound catabolic process biogenic amine catabolic process phenol-containing compound catabolic process dopamine catabolic process amine catabolic process response to cocaine response to alkaloid	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane presynapse presynaptic membrane dopaminergic synapse intracellular anatomical structure cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane presynapse presynaptic membrane dopaminergic synapse intracellular anatomical structure cytoplasm membrane raft protein-containing complex plasma membrane protein complex plasma membrane raft membrane protein complex caveola membrane microdomain flotillin complex cell projection neuron projection plasma membrane bounded cell projection somatodendritic compartment cell body neuronal cell body axon cell surface axon terminus distal axon neuron projection terminus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000175	Sodium:neurotransmitter symporter	Family
A	IPR002436	Sodium:neurotransmitter symporter, dopamine	Family
A	IPR037272	Sodium:neurotransmitter symporter superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q01959	Parkinson disease dementia dystonic disorder schizophrenia attention deficit hyperactivity disorder, inattentive type cocaine dependence nervous system disorder tic disorder depressive disorder alcohol abuse amphetamine abuse transient tic disorder parkinsonism-dystonia, infantile Memory Disorders cocaine abuse Parkinson disease dementia dystonic disorder schizophrenia attention deficit hyperactivity disorder, inattentive type cocaine dependence nervous system disorder tic disorder depressive disorder alcohol abuse amphetamine abuse transient tic disorder parkinsonism-dystonia, infantile Memory Disorders cocaine abuse sleep-wake disorder nicotine dependence anxiety disorder parkinsonism-dystonia, infantile, 1 seasonal affective disorder colorectal cancer narcolepsy squamous cell lung carcinoma drug psychosis Alzheimer disease estrogen-receptor negative breast cancer obesity disorder toxic encephalopathy benign prostatic hyperplasia major depressive disorder medulloblastoma breast carcinoma chronic tic disorder skin basal cell carcinoma cutaneous melanoma nasopharyngeal disease neurodegenerative disease testicular cancer exocrine pancreatic carcinoma oral cavity cancer intellectual disability lung adenocarcinoma malignant mesothelioma progressive supranuclear palsy binge eating disorder melanoma colorectal adenoma mood disorder delirium multiple system atrophy diabetes mellitus substance abuse essential tremor testicular germ cell tumor osteosarcoma uveal melanoma lung carcinoma bipolar disorder

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Solute Carrier (SLC) Transporter Superfamily	DAT Dopamine transporter, apo form, inward-facing state

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.