8XWV | pdb_00008xwv

Structure of CXCR2 bound to CXCL1 (CXCR2-CXCL1-Go Full map)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth G]SCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070798 3001771 SCOP2B (2022-06-29)
C [auth R]SCOP2B SuperfamilyG protein-coupled receptor-like 8098598 3000473 SCOP2B (2022-06-29)
B [auth E]SCOP2B SuperfamilyInterleukin 8-like chemokines 8034280 3001955 SCOP2B (2022-06-29)
A [auth D]SCOP2B SuperfamilyInterleukin 8-like chemokines 8034280 3001955 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth G]PF00631GGL domain (G-gamma)GGL domainG-protein gamma like domains (GGL) are found in the gamma subunit of the heterotrimeric G protein complex and in regulators of G protein signaling (RGS) proteins [1]. It is also found fused to an inactive Galpha in the Dictyostelium protein gbqA [2] ...G-protein gamma like domains (GGL) are found in the gamma subunit of the heterotrimeric G protein complex and in regulators of G protein signaling (RGS) proteins [1]. It is also found fused to an inactive Galpha in the Dictyostelium protein gbqA [2]. G-gamma likely shares a common origin with the helical N-terminal unit of G-beta [2]. All organisms that posses a G-beta possess a G-gamma [2].
Domain
E [auth B]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D [auth A]PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain
C [auth R]PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain
A [auth D],
B [auth E]
PF00048Small cytokines (intecrine/chemokine), interleukin-8 like (IL8)Small cytokines (intecrine/chemokine), interleukin-8 likeIncludes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth H]Antibody fragment ScFv16---
F [auth G]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
E [auth B]Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
D [auth A]Guanine nucleotide-binding protein G(o) subunit alpha
C [auth R]C-X-C chemokine receptor type 2
A [auth D],
B [auth E]
Growth-regulated alpha protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth G]IPR001770G-protein, gamma subunitFamily
F [auth G]IPR015898G-protein, gamma subunit-like domainDomain
F [auth G]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
E [auth B]IPR019775WD40 repeat, conserved siteConserved Site
E [auth B]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
E [auth B]IPR001632G-protein beta subunit-like, WD40 repeatsDomain
E [auth B]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth B]IPR016346G-protein subunit beta 1-5Family
E [auth B]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth B]IPR001680WD40 repeatRepeat
D [auth A]IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
D [auth A]IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
D [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth A]IPR001408G-protein alpha subunit, group IFamily
C [auth R]IPR000276G protein-coupled receptor, rhodopsin-likeFamily
C [auth R]IPR000057CXC chemokine receptor 2Family
C [auth R]IPR017452GPCR, rhodopsin-like, 7TMDomain
C [auth R]IPR050119C-C chemokine receptor type 1-9-likeFamily
C [auth R]IPR000174CXC chemokine receptor 1/2Family
A [auth D],
B [auth E]
IPR001811Chemokine interleukin-8-like domainDomain
A [auth D],
B [auth E]
IPR036048Chemokine interleukin-8-like superfamilyHomologous Superfamily
A [auth D],
B [auth E]
IPR001089CXC chemokineFamily
A [auth D],
B [auth E]
IPR039809Chemokine beta/gamma/deltaFamily
A [auth D],
B [auth E]
IPR033899CXC Chemokine domainDomain
A [auth D],
B [auth E]
IPR018048CXC chemokine, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F [auth G]PharosP59768
E [auth B]PharosP62873
D [auth A]PharosP09471
C [auth R]PharosP25025
A [auth D],
B [auth E]
PharosP09341