8XQ0 | pdb_00008xq0

Crystal structure of spleen tyrosine kinase(SYK)in complex with SKI-G-1653

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Protein kinase-like (PK-like)	8043784	3000066	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Protein kinase-like (PK-like)	8043784	3000066	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Protein kinase-like (PK-like)	8043784	3000066	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Protein kinase-like (PK-like)	8043784	3000066	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	UCR_hinge	e8xq0D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UCR_hinge	ECOD (v295.2)
C	UCR_hinge	e8xq0C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UCR_hinge	ECOD (v295.2)
B	UCR_hinge	e8xq0B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UCR_hinge	ECOD (v295.2)
A	UCR_hinge	e8xq0A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UCR_hinge	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF07714	Protein tyrosine and serine/threonine kinase (PK_Tyr_Ser-Thr)	Protein tyrosine and serine/threonine kinase	Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphospha ...	Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity [1]; Serine/threonine-protein kinases, tyrosine-protein kinases, and dual specificity protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins). This entry represents the catalytic domain found in a number of serine/threonine- and tyrosine-protein kinases. It does not include the catalytic domain of dual specificity kinases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Tyrosine-protein kinase SYK	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups protein binding binding signaling receptor binding Toll-like receptor binding phosphoprotein binding phosphotyrosine residue binding protein phosphorylated amino acid binding protein tyrosine kinase activity catalytic activity, acting on a protein protein kinase activity kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups protein binding binding signaling receptor binding Toll-like receptor binding phosphoprotein binding phosphotyrosine residue binding protein phosphorylated amino acid binding protein tyrosine kinase activity catalytic activity, acting on a protein protein kinase activity phosphotransferase activity, alcohol group as acceptor adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding non-membrane spanning protein tyrosine kinase activity phosphatase binding enzyme binding phospholipase binding cytokine receptor binding interleukin-15 receptor binding SH2 domain binding protein domain specific binding scaffold protein binding cell adhesion molecule binding protein-containing complex binding integrin binding kinase binding protein kinase binding protein serine/threonine kinase activity	regulation of biological process regulation of cellular process reactive oxygen species metabolic process biological regulation positive regulation of biological process regulation of superoxide metabolic process positive regulation of reactive oxygen species metabolic process superoxide metabolic process positive regulation of metabolic process superoxide anion generation metabolic process cellular process positive regulation of superoxide anion generation regulation of superoxide anion generation regulation of biological process regulation of cellular process reactive oxygen species metabolic process biological regulation positive regulation of biological process regulation of superoxide metabolic process positive regulation of reactive oxygen species metabolic process superoxide metabolic process positive regulation of metabolic process superoxide anion generation metabolic process cellular process positive regulation of superoxide anion generation regulation of superoxide anion generation regulation of metabolic process regulation of reactive oxygen species metabolic process positive regulation of cellular process response to stimulus immune response immune system process adaptive immune response multicellular organismal process cell activation localization import into cell receptor internalization transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport positive regulation of cellular component organization regulation of cellular component organization protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis cellular component organization cellular component biogenesis positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular component organization or biogenesis regulation of immune effector process neutrophil activation regulation of localization regulation of myeloid leukocyte mediated immunity regulated exocytosis cell activation involved in immune response leukocyte degranulation myeloid leukocyte mediated immunity myeloid leukocyte activation neutrophil activation involved in immune response establishment of localization in cell leukocyte mediated immunity regulation of immune system process immune effector process regulation of secretion regulation of leukocyte mediated immunity exocytosis regulation of response to stimulus regulation of immune response cellular localization leukocyte activation regulation of regulated secretory pathway neutrophil mediated immunity secretion by cell regulation of secretion by cell regulation of neutrophil degranulation leukocyte activation involved in immune response neutrophil degranulation regulation of leukocyte degranulation secretion regulation of transport export from cell regulation of vesicle-mediated transport myeloid cell activation involved in immune response regulation of exocytosis granulocyte activation cell chemotaxis cellular response to stimulus chemotaxis neutrophil chemotaxis response to external stimulus neutrophil migration granulocyte migration leukocyte migration cellular response to chemical stimulus taxis granulocyte chemotaxis response to chemical myeloid leukocyte migration cell migration cell motility leukocyte chemotaxis locomotion biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to biotic stimulus defense response to other organism response to stress innate immune response response to external biotic stimulus cellular response to molecule of fungal origin cellular response to biotic stimulus response to molecule of fungal origin response to fungus establishment of protein localization nucleocytoplasmic transport nuclear transport intracellular transport protein localization to nucleus import into nucleus establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle protein import into nucleus intracellular protein localization intracellular protein transport defense response to bacterium response to bacterium regulation of body fluid levels wound healing hemostasis blood coagulation coagulation regulation of biological quality response to wounding platelet activation positive regulation of interleukin-8 production positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process regulation of multicellular organismal process regulation of biosynthetic process interleukin-8 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of interleukin-8 production macrophage activation involved in immune response macrophage activation regulation of phagocytosis phagocytosis regulation of endocytosis response to lectin cellular response to lectin protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process primary metabolic process protein metabolic process protein modification process cellular response to low-density lipoprotein particle stimulus response to endogenous stimulus response to lipoprotein particle cellular response to lipoprotein particle stimulus immune response-regulating cell surface receptor signaling pathway cell surface receptor signaling pathway signaling cell communication Fc receptor signaling pathway immune response-regulating signaling pathway Fc-epsilon receptor signaling pathway signal transduction regulation of signaling regulation of signal transduction regulation of MAPK cascade intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade interleukin-10 production regulation of interleukin-10 production positive regulation of interleukin-10 production regulation of cell activation regulation of platelet activation regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response negative regulation of biological process inflammatory response to antigenic stimulus regulation of response to stress negative regulation of inflammatory response to antigenic stimulus negative regulation of response to stimulus negative regulation of immune response regulation of inflammatory response to antigenic stimulus regulation of inflammatory response negative regulation of immune system process negative regulation of response to external stimulus negative regulation of defense response inflammatory response cell adhesion cell-cell adhesion leukocyte cell-cell adhesion homeostatic process regulation of bone remodeling tissue homeostasis regulation of tissue remodeling regulation of bone resorption bone resorption multicellular organismal-level homeostasis tissue remodeling bone remodeling anatomical structure homeostasis positive regulation of bone resorption regulation of leukocyte differentiation regulation of leukocyte activation mononuclear cell differentiation regulation of cell differentiation positive regulation of B cell differentiation lymphocyte differentiation regulation of cell development positive regulation of developmental process positive regulation of cell activation multicellular organism development cell differentiation positive regulation of leukocyte activation anatomical structure development positive regulation of immune system process developmental process positive regulation of cell development leukocyte differentiation cellular developmental process regulation of developmental process cell development lymphocyte activation positive regulation of lymphocyte activation regulation of B cell differentiation B cell differentiation positive regulation of hemopoiesis positive regulation of cell differentiation regulation of B cell activation regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis B cell activation positive regulation of B cell activation regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation regulation of lymphocyte activation response to cytokine cytokine-mediated signaling pathway cellular response to tumor necrosis factor tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus regulation of tumor necrosis factor-mediated signaling pathway regulation of cytokine-mediated signaling pathway response to peptide regulation of response to cytokine stimulus response to tumor necrosis factor positive regulation of type I interferon production type I interferon production regulation of type I interferon production blood vessel morphogenesis tube development vasculature development circulatory system development anatomical structure morphogenesis tube morphogenesis animal gross anatomical part developmental process blood vessel development system development positive regulation of response to biotic stimulus pattern recognition receptor signaling pathway immune response-activating signaling pathway positive regulation of immune response innate immune response-activating signaling pathway immune response-activating cell surface receptor signaling pathway regulation of innate immune response positive regulation of defense response activation of innate immune response activation of immune response regulation of response to biotic stimulus innate immune response activating cell surface receptor signaling pathway positive regulation of response to stimulus positive regulation of response to external stimulus cell surface pattern recognition receptor signaling pathway positive regulation of innate immune response B cell receptor signaling pathway antigen receptor-mediated signaling pathway animal organ development animal organ morphogenesis angiogenesis anatomical structure formation involved in morphogenesis interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production regulation of receptor internalization positive regulation of endocytosis positive regulation of receptor-mediated endocytosis regulation of receptor-mediated endocytosis positive regulation of receptor internalization positive regulation of transport amyloid-beta clearance integrin-mediated signaling pathway nitrogen compound transport serotonin secretion involved in inflammatory response organic hydroxy compound transport serotonin secretion by platelet signal release serotonin secretion serotonin production involved in inflammatory response production of molecular mediator involved in inflammatory response platelet degranulation cell-cell signaling exocytic process stimulatory C-type lectin receptor signaling pathway regulation of interleukin-12 production interleukin-12 production positive regulation of interleukin-12 production regulation of monocyte chemotactic protein-1 production positive regulation of monocyte chemotactic protein-1 production monocyte chemotactic protein-1 production regulation of chemokine production chemokine production positive regulation of chemokine production regulation of lipid transport regulation of arachidonate secretion arachidonate secretion monocarboxylic acid transport fatty acid transport icosanoid transport regulation of icosanoid secretion icosanoid secretion long-chain fatty acid transport carboxylic acid transport arachidonate transport lipid localization lipid transport regulation of fatty acid transport organic acid transport regulation of lipid localization regulation of organic acid transport positive regulation of cell communication positive regulation of signal transduction positive regulation of TORC1 signaling positive regulation of TOR signaling regulation of TORC1 signaling TOR signaling regulation of TOR signaling positive regulation of intracellular signal transduction TORC1 signaling positive regulation of signaling positive regulation of cell adhesion mediated by integrin positive regulation of cell adhesion regulation of cell adhesion mediated by integrin regulation of cell adhesion cell adhesion mediated by integrin peptidyl-tyrosine phosphorylation adaptive thermogenesis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis homotypic cell-cell adhesion regulation of cell-cell adhesion regulation of homotypic cell-cell adhesion platelet aggregation regulation of platelet aggregation cell death apoptotic signaling pathway apoptotic process programmed cell death RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production regulation of interleukin-4 production positive regulation of interleukin-4 production interleukin-4 production interleukin-3-mediated signaling pathway cellular response to nitrogen compound response to oxygen-containing compound response to nitrogen compound cellular response to amyloid-beta cellular response to oxygen-containing compound response to amyloid-beta lymph vessel development Fc-gamma receptor signaling pathway involved in phagocytosis Fc-gamma receptor signaling pathway Fc receptor mediated stimulatory signaling pathway response to lipid cellular response to lipid	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex immunoglobulin complex B cell receptor complex cell periphery plasma membrane signaling receptor complex signaling receptor complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex immunoglobulin complex B cell receptor complex cell periphery plasma membrane signaling receptor complex signaling receptor complex T cell receptor complex membrane-bounded organelle early phagosome intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle vesicle endocytic vesicle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR008266	Tyrosine-protein kinase, active site	Active Site
A, B, C, D	IPR023420	Tyrosine-protein kinase SYK/ZAP-70, inter-SH2 domain superfamily	Homologous Superfamily
A, B, C, D	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A, B, C, D	IPR000719	Protein kinase domain	Domain
A, B, C, D	IPR012234	Tyrosine-protein kinase, non-receptor SYK/ZAP-70	Family
A, B, C, D	IPR035838	SYK/ZAP-70, N-terminal SH2 domain	Domain
A, B, C, D	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B, C, D	IPR036860	SH2 domain superfamily	Homologous Superfamily
A, B, C, D	IPR000980	SH2 domain	Domain
A, B, C, D	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A, B, C, D	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR050198	Non-receptor tyrosine kinases involved in cell signaling	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	: P43405	melanoma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma subependymal giant cell astrocytoma tuberculosis B-cell chronic lymphocytic leukemia cutaneous melanoma hematologic disease lung cancer lymphoplasmacytic lymphoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis thrombocytopenia due to immune destruction vascular dementia melanoma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma subependymal giant cell astrocytoma tuberculosis B-cell chronic lymphocytic leukemia cutaneous melanoma hematologic disease lung cancer lymphoplasmacytic lymphoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis thrombocytopenia due to immune destruction vascular dementia benign mesothelioma diabetes mellitus invasive ductal breast carcinoma lung carcinoma malignant glioma mesothelioma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma Sjogren syndrome transitional cell carcinoma cancer glioblastoma large cell medulloblastoma lymphatic system disease Malignant lymphoma, lymphocytic, intermediate differentiation, diffuse osteosarcoma

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.