8XPM

Mature virion portal of phage lambda with DNA

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], M [auth b], PA [auth B5], QA [auth b5], R [auth B1], S [auth b1], X [auth B2], Y [auth b2]	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	PF16461	Lambda phage tail tube protein, TTP (Phage_TTP_12)	Lambda phage tail tube protein, TTP	-	Family
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	PF02368	Bacterial Ig-like domain (group 2) (Big_2)	Bacterial Ig-like domain (group 2)	This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.	Domain
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	PF06141	Phage minor tail protein U (Phage_tail_U)	Phage minor tail protein U	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], M [auth b], PA [auth B5], QA [auth b5], R [auth B1], S [auth b1], X [auth B2], Y [auth b2]	Portal protein B	DNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly	protein-containing complex viral capsid virion component viral portal complex
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	Tail tube protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	virus tail, tube virus tail virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	Tail tube terminator protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity virus tail virion component
AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], L [auth w], MA [auth W5], NA [auth w5], O [auth W1], P [auth w1], U [auth W2], V [auth w2]	Head completion protein	-	viral process viral life cycle	virion component
I [auth DA]	DNA (104-MER)	-	-	-
J [auth DB]	DNA (92-MER)	-	-	-
FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], Z [auth f3]	Head-tail connector protein FII	-	virion assembly viral process viral life cycle	virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], M [auth b], PA [auth B5], QA [auth b5], R [auth B1], S [auth b1], X [auth B2], Y [auth b2]	IPR006429	Phage portal protein, lambda family	Family
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	IPR032494	Lambda phage tail tube protein	Family
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	IPR003343	Bacterial Ig-like domain, group 2	Domain
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	IPR035934	Phage tail protein-like superfamily	Homologous Superfamily
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	IPR009312	Minor tail protein U-like	Family
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	IPR038512	GpU-like superfamily	Homologous Superfamily
AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], L [auth w], MA [auth W5], NA [auth w5], O [auth W1], P [auth w1], U [auth W2], V [auth w2]	IPR036626	Head-to-tail joining protein W superfamily	Homologous Superfamily
AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], L [auth w], MA [auth W5], NA [auth w5], O [auth W1], P [auth w1], U [auth W2], V [auth w2]	IPR004174	Head-to-tail joining protein W	Family
FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], Z [auth f3]	IPR008018	Bacteriophage tail attachment protein FII	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.