8XPM | pdb_00008xpm

Mature virion portal of phage lambda with DNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth f3]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
T [auth f2]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
N [auth f1]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
LA [auth f5]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
K [auth f]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
FA [auth f4]SCOP2B SuperfamilyPhage tail proteins 8040058 3000268 SCOP2B (2022-06-29)
V [auth w2]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
U [auth W2]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
P [auth w1]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
O [auth W1]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
NA [auth w5]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
MA [auth W5]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
L [auth w]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
HA [auth w4]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
H [auth W]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
GA [auth W4]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
BA [auth w3]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
AA [auth W3]SCOP2B SuperfamilyHead-to-tail joining protein W, gpW 8033427 3000920 SCOP2B (2022-06-29)
W [auth U2]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
Q [auth U1]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
OA [auth U5]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
IA [auth U4]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
F [auth U]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
CA [auth U3]SCOP2B SuperfamilyPhage tail protein-like 8035093 3001913 SCOP2B (2022-06-29)
ZA [auth O2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
YA [auth o1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
XA [auth O1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
WA [auth o]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
VA [auth v2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
UA [auth V2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
TA [auth v1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
SA [auth V1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
RA [auth v]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
PB [auth r2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
OB [auth R2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
NB [auth r1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
MB [auth R1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
LB [auth r]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
KB [auth q2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
JB [auth Q2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
IB [auth q1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
HB [auth Q1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
GB [auth q]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
G [auth V]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
FB [auth p2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
EB [auth P2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
E [auth R]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
DB [auth p1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
D [auth Q]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
CB [auth P1]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
C [auth P]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
BB [auth p]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
B [auth O]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)
AB [auth o2]SCOP2B SuperfamilyT6SS-like 8091256 3000580 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth f3]UCR_hingee8xpmf31 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
T [auth f2]UCR_hingee8xpmf21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
N [auth f1]UCR_hingee8xpmf11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
LA [auth f5]UCR_hingee8xpmf51 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
K [auth f]UCR_hingee8xpmf1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
FA [auth f4]UCR_hingee8xpmf41 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
V [auth w2]UCR_hingee8xpmw21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
U [auth W2]UCR_hingee8xpmW21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
P [auth w1]UCR_hingee8xpmw11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
O [auth W1]UCR_hingee8xpmW11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
NA [auth w5]UCR_hingee8xpmw51 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
MA [auth W5]UCR_hingee8xpmW51 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
L [auth w]UCR_hingee8xpmw1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
HA [auth w4]UCR_hingee8xpmw41 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
H [auth W]UCR_hingee8xpmW1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
GA [auth W4]UCR_hingee8xpmW41 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
BA [auth w3]UCR_hingee8xpmw31 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
AA [auth W3]UCR_hingee8xpmW31 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
W [auth U2]UCR_hingee8xpmU21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
Q [auth U1]UCR_hingee8xpmU11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
OA [auth U5]UCR_hingee8xpmU51 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
IA [auth U4]UCR_hingee8xpmU41 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
F [auth U]UCR_hingee8xpmU1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
CA [auth U3]UCR_hingee8xpmU31 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
ZA [auth O2]UCR_hingee8xpmO21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
YA [auth o1]UCR_hingee8xpmo11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
XA [auth O1]UCR_hingee8xpmO11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
WA [auth o]UCR_hingee8xpmo1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
VA [auth v2]UCR_hingee8xpmv21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
UA [auth V2]UCR_hingee8xpmV21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
TA [auth v1]UCR_hingee8xpmv11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
SA [auth V1]UCR_hingee8xpmV11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
RA [auth v]UCR_hingee8xpmv1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
PB [auth r2]UCR_hingee8xpmr21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
OB [auth R2]UCR_hingee8xpmR21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
NB [auth r1]UCR_hingee8xpmr11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
MB [auth R1]UCR_hingee8xpmR11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
LB [auth r]UCR_hingee8xpmr1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
KB [auth q2]UCR_hingee8xpmq21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
JB [auth Q2]UCR_hingee8xpmQ21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
IB [auth q1]UCR_hingee8xpmq11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
HB [auth Q1]UCR_hingee8xpmQ11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
GB [auth q]UCR_hingee8xpmq1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
G [auth V]UCR_hingee8xpmV1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
FB [auth p2]UCR_hingee8xpmp21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
EB [auth P2]UCR_hingee8xpmP21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
E [auth R]UCR_hingee8xpmR1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
DB [auth p1]UCR_hingee8xpmp11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
D [auth Q]UCR_hingee8xpmQ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
CB [auth P1]UCR_hingee8xpmP11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
C [auth P]UCR_hingee8xpmP1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
BB [auth p]UCR_hingee8xpmp1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
B [auth O]UCR_hingee8xpmO1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)
AB [auth o2]UCR_hingee8xpmo21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UCR_hingeECOD (v295)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF06141Phage minor tail protein U (Phage_tail_U)Phage minor tail protein UTail fibre component U of bacteriophage. Domain
PF16461Lambda phage tail tube protein, TTP (Phage_TTP_12)Lambda phage tail tube protein, TTPThis family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerise with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is deliv ...This family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerise with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is delivered through the tube [1]. Members of this family from hexameric ring arrangement [2].
Domain
PF02368Bacterial Ig-like domain (group 2) (Big_2)Bacterial Ig-like domain (group 2)This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins. Domain
PF05136Phage portal protein, lambda family (Phage_portal_2)Phage portal protein, lambda family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Head-tail connector protein FII-
J [auth DB]DNA (92-MER)---
I [auth DA]DNA (104-MER)---
Head completion protein-
Tail tube terminator protein-
Tail tube protein-
Portal protein B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR053734Bacteriophage Head-Tail Connecting SuperfamilyHomologous Superfamily
IPR008018Bacteriophage tail attachment protein FIIFamily
IPR036626Head-to-tail joining protein W superfamilyHomologous Superfamily
IPR004174Head-to-tail joining protein WFamily
IPR035934Phage tail protein-like superfamilyHomologous Superfamily
IPR009312Minor tail protein U-likeFamily
IPR038512GpU-like superfamilyHomologous Superfamily
IPR003343Bacterial Ig-like domain, group 2Domain
IPR032494Lambda phage tail tube protein, N-terminalDomain
IPR006429Phage portal protein, lambda familyFamily