8XOW | pdb_00008xow

Mature virion portal of bacteriophage lambda

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
V [auth U3]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
P [auth U2]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
J [auth U1]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
HA [auth U5]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
D [auth U]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
BA [auth U4]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
Z [auth W4]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
U [auth w3]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
T [auth W3]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
O [auth w2]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
N [auth W2]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
I [auth w1]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
H [auth W1]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
GA [auth w5]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
FA [auth W5]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
C [auth w]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
B [auth W]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
AA [auth w4]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
Y [auth f4]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
S [auth f3]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
M [auth f2]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
G [auth f1]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
EA [auth f5]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
A [auth f]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
V [auth U3]	UCR_hinge	e8xowU31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
P [auth U2]	UCR_hinge	e8xowU21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
J [auth U1]	UCR_hinge	e8xowU11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
HA [auth U5]	UCR_hinge	e8xowU51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
D [auth U]	UCR_hinge	e8xowU1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
BA [auth U4]	UCR_hinge	e8xowU41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
Z [auth W4]	UCR_hinge	e8xowW41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
U [auth w3]	UCR_hinge	e8xoww31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
T [auth W3]	UCR_hinge	e8xowW31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
O [auth w2]	UCR_hinge	e8xoww21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
N [auth W2]	UCR_hinge	e8xowW21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
I [auth w1]	UCR_hinge	e8xoww11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
H [auth W1]	UCR_hinge	e8xowW11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
GA [auth w5]	UCR_hinge	e8xoww51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
FA [auth W5]	UCR_hinge	e8xowW51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
C [auth w]	UCR_hinge	e8xoww1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
B [auth W]	UCR_hinge	e8xowW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
AA [auth w4]	UCR_hinge	e8xoww41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
Y [auth f4]	UCR_hinge	e8xowf41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
S [auth f3]	UCR_hinge	e8xowf31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
M [auth f2]	UCR_hinge	e8xowf21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
G [auth f1]	UCR_hinge	e8xowf11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
EA [auth f5]	UCR_hinge	e8xowf51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)
A [auth f]	UCR_hinge	e8xowf1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: UCR_hinge	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], JA [auth b5], K [auth B1], L [auth b1], Q [auth B2], R [auth b2], W [auth B3], X [auth b3]	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	PF06141	Phage minor tail protein U (Phage_tail_U)	Phage minor tail protein U	Tail fibre component U of bacteriophage.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], JA [auth b5], K [auth B1], L [auth b1], Q [auth B2], R [auth b2], W [auth B3], X [auth b3]	Portal protein B	DNA binding binding nucleic acid binding structural molecule activity	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly	protein-containing complex viral capsid virion component viral portal complex
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	Tail tube terminator protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part virus tail virion component
AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], H [auth W1], I [auth w1], N [auth W2], O [auth w2], T [auth W3], U [auth w3], Z [auth W4]	Head completion protein	-	viral process viral life cycle	virion component
A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], Y [auth f4]	Head-tail connector protein FII	-	virion assembly viral process viral life cycle	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], JA [auth b5], K [auth B1], L [auth b1], Q [auth B2], R [auth b2], W [auth B3], X [auth b3]	IPR006429	Phage portal protein, lambda family	Family
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	IPR035934	Phage tail protein-like superfamily	Homologous Superfamily
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	IPR009312	Minor tail protein U-like	Family
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	IPR038512	GpU-like superfamily	Homologous Superfamily
AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], H [auth W1], I [auth w1], N [auth W2], O [auth w2], T [auth W3], U [auth w3], Z [auth W4]	IPR036626	Head-to-tail joining protein W superfamily	Homologous Superfamily
AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], H [auth W1], I [auth w1], N [auth W2], O [auth w2], T [auth W3], U [auth w3], Z [auth W4]	IPR004174	Head-to-tail joining protein W	Family
A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], Y [auth f4]	IPR053734	Bacteriophage Head-Tail Connecting Superfamily	Homologous Superfamily
A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], Y [auth f4]	IPR008018	Bacteriophage tail attachment protein FII	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.