8XJV | pdb_00008xjv

Structural basis for the linker histone H5-nucleosome binding and chromatin compaction

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
AC [auth ao]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
BC [auth ap]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
CC [auth aq]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
DC [auth ar]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
EC [auth as]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
FC [auth at]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
GC [auth au]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
I [auth G]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
J [auth H]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
K [auth I]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
M [auth K]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
N [auth L]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
QC [auth Ae]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
VB [auth aj]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
WB [auth ak]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
XB [auth al]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
YB [auth am]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
ZB [auth an]	SCOP2B Superfamily	Core histone-like	8067126	3001387	SCOP2B (2022-06-29)
FD [auth At]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
HC [auth av]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
IC [auth aw]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
JC [auth ax]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
KC [auth ay]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
L [auth J]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
LC [auth az]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
MC [auth Aa]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
NC [auth Ab]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
O [auth M]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
OC [auth Ac]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
P [auth N]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
PC [auth Ad]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
Q [auth O]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
R [auth P]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
RC [auth Af]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
S [auth Q]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
SC [auth Ag]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
T [auth R]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
U [auth S]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
V [auth T]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
W [auth U]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
X [auth V]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
Y [auth W]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
AA [auth Y]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
BA [auth Z]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
CA [auth a]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
DA [auth b]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
EA [auth c]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
FA [auth d]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
GA [auth e]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
HA [auth f]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
IA [auth g]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
JA [auth h]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
KA [auth i]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
LA [auth j]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
MA [auth k]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
NA [auth l]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
OA [auth m]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
PA [auth n]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
QA [auth o]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
RA [auth p]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
SA [auth q]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
TA [auth r]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
UA [auth s]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
VA [auth t]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
WA [auth u]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
Z [auth X]	SCOP2B Superfamily	Core histone-like	8096712	3001387	SCOP2B (2022-06-29)
AB [auth y]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
BB [auth z]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
CB [auth 0]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
DB [auth 1]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
EB [auth 2]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
FB [auth 3]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
GB [auth 4]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
HB [auth 5]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
IB [auth 6]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
JB [auth 7]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
KB [auth 8]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
LB [auth 9]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
MB [auth CD]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
NB [auth a2]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
OB [auth a3]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
PB [auth a4]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
QB [auth a5]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
RB [auth a6]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
SB [auth a7]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
TB [auth a8]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
UB [auth a9]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
XA [auth v]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
YA [auth w]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
ZA [auth x]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
AD [auth Ao]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
BD [auth Ap]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
CD [auth Aq]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
DD [auth Ar]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
ED [auth As]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
TC [auth Ah]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
UC [auth Ai]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
VC [auth Aj]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
WC [auth Ak]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
XC [auth Al]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
YC [auth Am]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)
ZC [auth An]	SCOP2B Superfamily	Winged helix DNA-binding domain	8002931	3000034	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth J]		e8xjvJ01	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: Galactose-binding domain-like	T: Levi_coat	F:	ECOD (20:10:01)
TC [auth Ah]		e8xjvAh01	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: Galactose-binding domain-like	T: Levi_coat	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], DC [auth ar], E [auth C], EC [auth as], F [auth D], FC [auth at], G [auth E], GC [auth au], H [auth F], I [auth G], J [auth H], K [auth I], M [auth K], N [auth L], QC [auth Ae], VB [auth aj], WB [auth ak], XB [auth al], YB [auth am], ZB [auth an]	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family
AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], DC [auth ar], E [auth C], EC [auth as], F [auth D], FC [auth at], G [auth E], GC [auth au], H [auth F], I [auth G], J [auth H], K [auth I], M [auth K], N [auth L], QC [auth Ae], VB [auth aj], WB [auth ak], XB [auth al], YB [auth am], ZB [auth an]	PF00125	Core histone H2A/H2B/H3/H4 domain (Histone)	Core histone H2A/H2B/H3/H4 domain		Domain
FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], L [auth J], LC [auth az], MC [auth Aa], NC [auth Ab], O [auth M], OC [auth Ac], P [auth N], PC [auth Ad], Q [auth O], R [auth P], RC [auth Af], S [auth Q], SC [auth Ag], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W]	PF00125	Core histone H2A/H2B/H3/H4 domain (Histone)	Core histone H2A/H2B/H3/H4 domain		Domain
AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], HA [auth f], IA [auth g], JA [auth h], KA [auth i], LA [auth j], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth p], SA [auth q], TA [auth r], UA [auth s], VA [auth t], WA [auth u], Z [auth X]	PF00125	Core histone H2A/H2B/H3/H4 domain (Histone)	Core histone H2A/H2B/H3/H4 domain		Domain
AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], FB [auth 3], GB [auth 4], HB [auth 5], IB [auth 6], JB [auth 7], KB [auth 8], LB [auth 9], MB [auth CD], NB [auth a2], OB [auth a3], PB [auth a4], QB [auth a5], RB [auth a6], SB [auth a7], TB [auth a8], UB [auth a9], XA [auth v], YA [auth w], ZA [auth x]	PF15511	Centromere kinetochore component CENP-T histone fold (CENP-T_C)	Centromere kinetochore component CENP-T histone fold	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth Au]	DNA	-	-	-
B [auth Av]	DNA	-	-	-
AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], DC [auth ar], E [auth C], EC [auth as], F [auth D], FC [auth at], G [auth E], GC [auth au], H [auth F], I [auth G], J [auth H], K [auth I], M [auth K], N [auth L], QC [auth Ae], VB [auth aj], WB [auth ak], XB [auth al], YB [auth am], ZB [auth an]	Histone H2A	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process cellular process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], L [auth J], LC [auth az], MC [auth Aa], NC [auth Ab], O [auth M], OC [auth Ac], P [auth N], PC [auth Ad], Q [auth O], R [auth P], RC [auth Af], S [auth Q], SC [auth Ag], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W]	Histone H2B 1.1	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], HA [auth f], IA [auth g], JA [auth h], KA [auth i], LA [auth j], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth p], SA [auth q], TA [auth r], UA [auth s], VA [auth t], WA [auth u], Z [auth X]	Histone H3	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], FB [auth 3], GB [auth 4], HB [auth 5], IB [auth 6], JB [auth 7], KB [auth 8], LB [auth 9], MB [auth CD], NB [auth a2], OB [auth a3], PB [auth a4], QB [auth a5], RB [auth a6], SB [auth a7], TB [auth a8], UB [auth a9], XA [auth v], YA [auth w], ZA [auth x]	Histone H4	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], TC [auth Ah], UC [auth Ai], VC [auth Aj], WC [auth Ak], XC [auth Al], YC [auth Am], ZC [auth An]	Histone H5	DNA binding double-stranded DNA binding binding nucleic acid binding protein-containing complex binding chromatin binding nucleosome binding nucleosomal DNA binding chromatin DNA binding structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization organelle organization protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization organelle organization chromosome condensation chromosome organization regulation of DNA recombination regulation of cellular process negative regulation of biological process regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process regulation of biological process negative regulation of metabolic process DNA recombination biological regulation primary metabolic process regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process negative regulation of DNA recombination negative regulation of DNA metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], DC [auth ar], E [auth C], EC [auth as], F [auth D], FC [auth at], G [auth E], GC [auth au], H [auth F], I [auth G], J [auth H], K [auth I], M [auth K], N [auth L], QC [auth Ae], VB [auth aj], WB [auth ak], XB [auth al], YB [auth am], ZB [auth an]	IPR009072	Histone-fold	Homologous Superfamily
AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], DC [auth ar], E [auth C], EC [auth as], F [auth D], FC [auth at], G [auth E], GC [auth au], H [auth F], I [auth G], J [auth H], K [auth I], M [auth K], N [auth L], QC [auth Ae], VB [auth aj], WB [auth ak], XB [auth al], YB [auth am], ZB [auth an]	IPR002119	Histone H2A	Family
AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], DC [auth ar], E [auth C], EC [auth as], F [auth D], FC [auth at], G [auth E], GC [auth au], H [auth F], I [auth G], J [auth H], K [auth I], M [auth K], N [auth L], QC [auth Ae], VB [auth aj], WB [auth ak], XB [auth al], YB [auth am], ZB [auth an]	IPR032454	Histone H2A, C-terminal domain	Domain
AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], DC [auth ar], E [auth C], EC [auth as], F [auth D], FC [auth at], G [auth E], GC [auth au], H [auth F], I [auth G], J [auth H], K [auth I], M [auth K], N [auth L], QC [auth Ae], VB [auth aj], WB [auth ak], XB [auth al], YB [auth am], ZB [auth an]	IPR032458	Histone H2A conserved site	Conserved Site
AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], AC [auth ao], BC [auth ap], C [auth A], CC [auth aq], D [auth B], DC [auth ar], E [auth C], EC [auth as], F [auth D], FC [auth at], G [auth E], GC [auth au], H [auth F], I [auth G], J [auth H], K [auth I], M [auth K], N [auth L], QC [auth Ae], VB [auth aj], WB [auth ak], XB [auth al], YB [auth am], ZB [auth an]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], L [auth J], LC [auth az], MC [auth Aa], NC [auth Ab], O [auth M], OC [auth Ac], P [auth N], PC [auth Ad], Q [auth O], R [auth P], RC [auth Af], S [auth Q], SC [auth Ag], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W]	IPR009072	Histone-fold	Homologous Superfamily
FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], L [auth J], LC [auth az], MC [auth Aa], NC [auth Ab], O [auth M], OC [auth Ac], P [auth N], PC [auth Ad], Q [auth O], R [auth P], RC [auth Af], S [auth Q], SC [auth Ag], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W]	IPR055333	Histone H2B, conserved site	Conserved Site
FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], L [auth J], LC [auth az], MC [auth Aa], NC [auth Ab], O [auth M], OC [auth Ac], P [auth N], PC [auth Ad], Q [auth O], R [auth P], RC [auth Af], S [auth Q], SC [auth Ag], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W]	IPR000558	Histone H2B	Family
FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], FD [auth At], HC [auth av], IC [auth aw], JC [auth ax], KC [auth ay], L [auth J], LC [auth az], MC [auth Aa], NC [auth Ab], O [auth M], OC [auth Ac], P [auth N], PC [auth Ad], Q [auth O], R [auth P], RC [auth Af], S [auth Q], SC [auth Ag], T [auth R], U [auth S], V [auth T], W [auth U], X [auth V], Y [auth W]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], HA [auth f], IA [auth g], JA [auth h], KA [auth i], LA [auth j], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth p], SA [auth q], TA [auth r], UA [auth s], VA [auth t], WA [auth u], Z [auth X]	IPR009072	Histone-fold	Homologous Superfamily
AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], HA [auth f], IA [auth g], JA [auth h], KA [auth i], LA [auth j], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth p], SA [auth q], TA [auth r], UA [auth s], VA [auth t], WA [auth u], Z [auth X]	IPR000164	Histone H3/CENP-A	Family
AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AA [auth Y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], HA [auth f], IA [auth g], JA [auth h], KA [auth i], LA [auth j], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth p], SA [auth q], TA [auth r], UA [auth s], VA [auth t], WA [auth u], Z [auth X]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], FB [auth 3], GB [auth 4], HB [auth 5], IB [auth 6], JB [auth 7], KB [auth 8], LB [auth 9], MB [auth CD], NB [auth a2], OB [auth a3], PB [auth a4], QB [auth a5], RB [auth a6], SB [auth a7], TB [auth a8], UB [auth a9], XA [auth v], YA [auth w], ZA [auth x]	IPR009072	Histone-fold	Homologous Superfamily
AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], FB [auth 3], GB [auth 4], HB [auth 5], IB [auth 6], JB [auth 7], KB [auth 8], LB [auth 9], MB [auth CD], NB [auth a2], OB [auth a3], PB [auth a4], QB [auth a5], RB [auth a6], SB [auth a7], TB [auth a8], UB [auth a9], XA [auth v], YA [auth w], ZA [auth x]	IPR001951	Histone H4	Family
AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], FB [auth 3], GB [auth 4], HB [auth 5], IB [auth 6], JB [auth 7], KB [auth 8], LB [auth 9], MB [auth CD], NB [auth a2], OB [auth a3], PB [auth a4], QB [auth a5], RB [auth a6], SB [auth a7], TB [auth a8], UB [auth a9], XA [auth v], YA [auth w], ZA [auth x]	IPR035425	CENP-T/Histone H4, histone fold	Domain
AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], FB [auth 3], GB [auth 4], HB [auth 5], IB [auth 6], JB [auth 7], KB [auth 8], LB [auth 9], MB [auth CD], NB [auth a2], OB [auth a3], PB [auth a4], QB [auth a5], RB [auth a6], SB [auth a7], TB [auth a8], UB [auth a9], XA [auth v], YA [auth w], ZA [auth x]	IPR019809	Histone H4, conserved site	Conserved Site
AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], AB [auth y], BB [auth z], CB [auth 0], DB [auth 1], EB [auth 2], FB [auth 3], GB [auth 4], HB [auth 5], IB [auth 6], JB [auth 7], KB [auth 8], LB [auth 9], MB [auth CD], NB [auth a2], OB [auth a3], PB [auth a4], QB [auth a5], RB [auth a6], SB [auth a7], TB [auth a8], UB [auth a9], XA [auth v], YA [auth w], ZA [auth x]	IPR004823	TATA box binding protein associated factor (TAF), histone-like fold domain	Domain
AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], TC [auth Ah], UC [auth Ai], VC [auth Aj], WC [auth Ak], XC [auth Al], YC [auth Am], ZC [auth An]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], TC [auth Ah], UC [auth Ai], VC [auth Aj], WC [auth Ak], XC [auth Al], YC [auth Am], ZC [auth An]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], TC [auth Ah], UC [auth Ai], VC [auth Aj], WC [auth Ak], XC [auth Al], YC [auth Am], ZC [auth An]	IPR005818	Linker histone H1/H5, domain H15	Domain
AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], AD [auth Ao], BD [auth Ap], CD [auth Aq], DD [auth Ar], ED [auth As], TC [auth Ah], UC [auth Ai], VC [auth Aj], WC [auth Ak], XC [auth Al], YC [auth Am], ZC [auth An]	IPR005819	Linker histone H1/H5	Family