8WIB

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth Q]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089012 3000995 SCOP2B (2022-06-29)
L [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082427 3000334 SCOP2B (2022-06-29)
M [auth T]SCOP2B SuperfamilyRibosomal protein L208075008 3000563 SCOP2B (2022-06-29)
N [auth U]SCOP2B Superfamilyl21p-like8082445 3002005 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyRibosomal protein L228081516 3001078 SCOP2B (2022-06-29)
P [auth W]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8077101 3000210 SCOP2B (2022-06-29)
Q [auth X]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082509 3000334 SCOP2B (2022-06-29)
R [auth Z]SCOP2B SuperfamilyRibosomal L27 protein-like8075032 3000539 SCOP2B (2022-06-29)
S [auth 1]SCOP2B SuperfamilyL28p-like8089398 3001966 SCOP2B (2022-06-29)
B [auth F]SCOP2B SuperfamilyTranslational proteins8089146 3000811 SCOP2B (2022-06-29)
T [auth 2]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8080678 3000713 SCOP2B (2022-06-29)
U [auth 3]SCOP2B SuperfamilyRibosomal protein L30p/L7e8076279 3001378 SCOP2B (2022-06-29)
W [auth 6]SCOP2B SuperfamilyZn-binding ribosomal proteins8075054 3001320 SCOP2B (2022-06-29)
Y [auth 8]SCOP2B SuperfamilyL35p-like8083338 3000790 SCOP2B (2022-06-29)
Z [auth 4]SCOP2B SuperfamilyL28p-like8086126 3001966 SCOP2B (2022-06-29)
C [auth G]SCOP2B SuperfamilyRibosomal protein L48080698 3001146 SCOP2B (2022-06-29)
GA [auth e]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083402 3001473 SCOP2B (2022-06-29)
IA [auth g]SCOP2B SuperfamilyRibosomal protein S68066499 3001323 SCOP2B (2022-06-29)
JA [auth h]SCOP2B SuperfamilyRibosomal protein S78077977 3000799 SCOP2B (2022-06-29)
KA [auth i]SCOP2B SuperfamilyRibosomal protein S88079055 3000709 SCOP2B (2022-06-29)
LA [auth j]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082671 3000100 SCOP2B (2022-06-29)
MA [auth k]SCOP2B SuperfamilyRibosomal protein S108096980 3001336 SCOP2B (2022-06-29)
D [auth H]SCOP2B SuperfamilyRL5-like8073880 3001709 SCOP2B (2022-06-29)
NA [auth l]SCOP2B SuperfamilyTranslational machinery components8096984 3000571 SCOP2B (2022-06-29)
OA [auth m]SCOP2B SuperfamilyNucleic acid-binding proteins8096978 3000135 SCOP2B (2022-06-29)
PA [auth n]SCOP2B SuperfamilyS13-like H2TH domain8096982 3000053 SCOP2B (2022-06-29)
QA [auth o]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8059246 3000068 SCOP2B (2022-06-29)
RA [auth p]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8072635 3001284 SCOP2B (2022-06-29)
TA [auth r]SCOP2B SuperfamilyNucleic acid-binding proteins8059280 3000135 SCOP2B (2022-06-29)
VA [auth t]SCOP2B SuperfamilyRibosomal protein S198086054 3000686 SCOP2B (2022-06-29)
G [auth M]SCOP2B SuperfamilyRibosomal protein L138066067 3001134 SCOP2B (2022-06-29)
H [auth N]SCOP2B Superfamily50S Ribosomal protein L14-like8072026 3000433 SCOP2B (2022-06-29)
I [auth O]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070563 3001045 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth E]50S ribosomal protein L2
J [auth Q]50S ribosomal protein L17
K [auth R]50S ribosomal protein L18
L [auth S]50S ribosomal protein L19
M [auth T]50S ribosomal protein L20
N [auth U]50S ribosomal protein L21
O [auth V]50S ribosomal protein L22
P [auth W]50S ribosomal protein L23
Q [auth X]50S ribosomal protein L24
R [auth Z]50S ribosomal protein L27
S [auth 1]50S ribosomal protein L28
B [auth F]50S ribosomal protein L3
T [auth 2]50S ribosomal protein L29
U [auth 3]50S ribosomal protein L30
V [auth 5]50S ribosomal protein L32
W [auth 6]50S ribosomal protein L33A
X [auth 7]50S ribosomal protein L34
Y [auth 8]50S ribosomal protein L35
Z [auth 4]50S ribosomal protein L31
AA [auth A]23S rRNA---
BA [auth B]5S rRNA---
CA [auth C]E-tRNA---
C [auth G]50S ribosomal protein L4
DA [auth a]16S rRNA---
EA [auth v]30S ribosomal protein S22- - -
FA [auth d]30S ribosomal protein S3
GA [auth e]30S ribosomal protein S4
HA [auth f]30S ribosomal protein S5
IA [auth g]30S ribosomal protein S6
JA [auth h]30S ribosomal protein S7
KA [auth i]30S ribosomal protein S8
LA [auth j]30S ribosomal protein S9
MA [auth k]30S ribosomal protein S10
D [auth H]50S ribosomal protein L5
NA [auth l]30S ribosomal protein S11
OA [auth m]30S ribosomal protein S12
PA [auth n]30S ribosomal protein S13
QA [auth o]30S ribosomal protein S14A
RA [auth p]30S ribosomal protein S15
SA [auth q]30S ribosomal protein S16
TA [auth r]30S ribosomal protein S17
UA [auth s]30S ribosomal protein S18B
VA [auth t]30S ribosomal protein S19
WA [auth u]30S ribosomal protein S20
E [auth I]50S ribosomal protein L6
XA [auth w]Ribosome hibernation promotion factor RafH- -
F [auth J]50S ribosomal protein L9
G [auth M]50S ribosomal protein L13
H [auth N]50S ribosomal protein L14
I [auth O]50S ribosomal protein L15

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth E]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
A [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
A [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
A [auth E]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
A [auth E]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
A [auth E]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth E]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
A [auth E]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
A [auth E]IPR002171Large ribosomal subunit protein uL2Family
J [auth Q]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
J [auth Q]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
J [auth Q]IPR000456Large ribosomal subunit protein bL17Family
K [auth R]IPR005484Large ribosomal subunit protein uL18Family
K [auth R]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
L [auth S]IPR001857Large ribosomal subunit protein bL19Family
L [auth S]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
L [auth S]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
L [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth T]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
M [auth T]IPR005813Large ribosomal subunit protein bL20Family
N [auth U]IPR028909Large ribosomal subunit protein bL21-likeFamily
N [auth U]IPR001787Large ribosomal subunit protein bL21Family
N [auth U]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
N [auth U]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
O [auth V]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
O [auth V]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
O [auth V]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
O [auth V]IPR001063Large ribosomal subunit protein uL22Family
O [auth V]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
P [auth W]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth W]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
P [auth W]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
P [auth W]IPR013025Large ribosomal subunit protein uL23-likeFamily
Q [auth X]IPR003256Large ribosomal subunit protein uL24Family
Q [auth X]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Q [auth X]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth X]IPR005824KOWDomain
Q [auth X]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth X]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
R [auth Z]IPR001684Large ribosomal subunit protein bL27Family
R [auth Z]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
S [auth 1]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
S [auth 1]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
S [auth 1]IPR026569Large ribosomal subunit protein bL28Family
S [auth 1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
B [auth F]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
B [auth F]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
B [auth F]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
B [auth F]IPR000597Large ribosomal subunit protein uL3Family
T [auth 2]IPR001854Large ribosomal subunit protein uL29Family
T [auth 2]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
T [auth 2]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
U [auth 3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
U [auth 3]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
U [auth 3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
U [auth 3]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
V [auth 5]IPR002677Large ribosomal subunit protein bL32Family
V [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
W [auth 6]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
W [auth 6]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
W [auth 6]IPR001705Large ribosomal subunit protein bL33Family
W [auth 6]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
X [auth 7]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
X [auth 7]IPR000271Large ribosomal subunit protein bL34Family
Y [auth 8]IPR021137Large ribosomal subunit protein bL35-likeFamily
Y [auth 8]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
Y [auth 8]IPR001706Large ribosomal subunit protein bL35Family
Y [auth 8]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
Z [auth 4]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
Z [auth 4]IPR027491Large ribosomal subunit protein bL31 type AFamily
Z [auth 4]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
Z [auth 4]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
C [auth G]IPR013005Large ribosomal subunit protein uL4-likeFamily
C [auth G]IPR002136Large ribosomal subunit protein uL4Family
C [auth G]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
EA [auth v]IPR013177Ribosomal protein mS38, C-terminalDomain
FA [auth d]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
FA [auth d]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
FA [auth d]IPR004087K Homology domainDomain
FA [auth d]IPR004044K Homology domain, type 2Domain
FA [auth d]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
FA [auth d]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
FA [auth d]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
FA [auth d]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
GA [auth e]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
GA [auth e]IPR002942RNA-binding S4 domainDomain
GA [auth e]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
GA [auth e]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
GA [auth e]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
GA [auth e]IPR022801Small ribosomal subunit protein uS4Family
HA [auth f]IPR000851Small ribosomal subunit protein uS5Family
HA [auth f]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
HA [auth f]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
HA [auth f]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
HA [auth f]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
HA [auth f]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
HA [auth f]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IA [auth g]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
IA [auth g]IPR000529Small ribosomal subunit protein bS6Family
IA [auth g]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
IA [auth g]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IA [auth g]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
JA [auth h]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
JA [auth h]IPR000235Small ribosomal subunit protein uS7Family
JA [auth h]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
JA [auth h]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
JA [auth h]IPR023798Small ribosomal subunit protein uS7 domainDomain
KA [auth i]IPR000630Small ribosomal subunit protein uS8Family
KA [auth i]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
KA [auth i]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
LA [auth j]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
LA [auth j]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
LA [auth j]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
LA [auth j]IPR000754Small ribosomal subunit protein uS9Family
LA [auth j]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
MA [auth k]IPR001848Small ribosomal subunit protein uS10Family
MA [auth k]IPR027486Small ribosomal subunit protein uS10 domainDomain
MA [auth k]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
MA [auth k]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
D [auth H]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
D [auth H]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
D [auth H]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
D [auth H]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
D [auth H]IPR002132Large ribosomal subunit protein uL5Family
NA [auth l]IPR001971Small ribosomal subunit protein uS11Family
NA [auth l]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
NA [auth l]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
NA [auth l]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
OA [auth m]IPR006032Small ribosomal subunit protein uS12Family
OA [auth m]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
OA [auth m]IPR005679Ribosomal protein uS12, bacterial-typeFamily
PA [auth n]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
PA [auth n]IPR001892Small ribosomal subunit protein uS13Family
PA [auth n]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
PA [auth n]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
PA [auth n]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
QA [auth o]IPR001209Small ribosomal subunit protein uS14Family
QA [auth o]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
RA [auth p]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
RA [auth p]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
RA [auth p]IPR000589Small ribosomal subunit protein uS15Family
SA [auth q]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
SA [auth q]IPR000307Small ribosomal subunit protein bS16Family
SA [auth q]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
TA [auth r]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
TA [auth r]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
TA [auth r]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
TA [auth r]IPR000266Small ribosomal subunit protein uS17Family
UA [auth s]IPR001648Small ribosomal subunit protein bS18Family
UA [auth s]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
UA [auth s]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
VA [auth t]IPR002222Small ribosomal subunit protein uS19Family
VA [auth t]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
VA [auth t]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
VA [auth t]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
WA [auth u]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
WA [auth u]IPR002583Small ribosomal subunit protein bS20Family
E [auth I]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
E [auth I]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
E [auth I]IPR000702Large ribosomal subunit protein uL6-likeFamily
E [auth I]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
E [auth I]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
XA [auth w]IPR003489Ribosome hibernation promoting factor/RaiAFamily
XA [auth w]IPR036567Ribosome hibernation promotion factor-likeHomologous Superfamily
XA [auth w]IPR032528Sigma 54 modulation/S30EA ribosomal protein, C-terminalDomain
XA [auth w]IPR038416Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamilyHomologous Superfamily
F [auth J]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
F [auth J]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
F [auth J]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
F [auth J]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
F [auth J]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
F [auth J]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
F [auth J]IPR000244Large ribosomal subunit protein bL9Family
G [auth M]IPR005822Large ribosomal subunit protein uL13Family
G [auth M]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
G [auth M]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
H [auth N]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
H [auth N]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
H [auth N]IPR000218Large ribosomal subunit protein uL14Family
H [auth N]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
I [auth O]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
I [auth O]IPR021131Large ribosomal subunit protein uL15/eL18Domain
I [auth O]IPR030878Large ribosomal subunit protein uL15Family
I [auth O]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
I [auth O]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily