8WI9

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth j]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082671 3000100 SCOP2B (2022-06-29)
K [auth k]SCOP2B SuperfamilyRibosomal protein S108096980 3001336 SCOP2B (2022-06-29)
L [auth l]SCOP2B SuperfamilyTranslational machinery components8096984 3000571 SCOP2B (2022-06-29)
M [auth m]SCOP2B SuperfamilyNucleic acid-binding proteins8096978 3000135 SCOP2B (2022-06-29)
N [auth n]SCOP2B SuperfamilyS13-like H2TH domain8096982 3000053 SCOP2B (2022-06-29)
O [auth o]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8059256 3000068 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8072635 3001284 SCOP2B (2022-06-29)
R [auth r]SCOP2B SuperfamilyNucleic acid-binding proteins8059280 3000135 SCOP2B (2022-06-29)
T [auth t]SCOP2B SuperfamilyRibosomal protein S198086054 3000686 SCOP2B (2022-06-29)
V [auth c]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063840 3001397 SCOP2B (2022-06-29)
E [auth e]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083402 3001473 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein S68066499 3001323 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyRibosomal protein S78077977 3000799 SCOP2B (2022-06-29)
I [auth i]SCOP2B SuperfamilyRibosomal protein S88079055 3000709 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Q [auth q]30S ribosomal protein S16
A [auth a]16S rRNA---
J [auth j]30S ribosomal protein S9
K [auth k]30S ribosomal protein S10
L [auth l]30S ribosomal protein S11
M [auth m]30S ribosomal protein S12
N [auth n]30S ribosomal protein S13
O [auth o]30S ribosomal protein S14A
P [auth p]30S ribosomal protein S15
R [auth r]30S ribosomal protein S17
S [auth s]30S ribosomal protein S18B
B [auth b]30S ribosomal protein bS1 -
T [auth t]30S ribosomal protein S19
U [auth u]30S ribosomal protein S20
V [auth c]30S ribosomal protein S2
W [auth x]50S ribosomal protein L31
X [auth w]Ribosome hibernation promotion factor RafH- -
C [auth v]30S ribosomal protein S22- - -
D [auth d]30S ribosomal protein S3
E [auth e]30S ribosomal protein S4
F [auth f]30S ribosomal protein S5
G [auth g]30S ribosomal protein S6
H [auth h]30S ribosomal protein S7
I [auth i]30S ribosomal protein S8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
Q [auth q]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
Q [auth q]IPR000307Small ribosomal subunit protein bS16Family
Q [auth q]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
J [auth j]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
J [auth j]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
J [auth j]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
J [auth j]IPR000754Small ribosomal subunit protein uS9Family
J [auth j]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
K [auth k]IPR001848Small ribosomal subunit protein uS10Family
K [auth k]IPR027486Small ribosomal subunit protein uS10 domainDomain
K [auth k]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
K [auth k]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
L [auth l]IPR001971Small ribosomal subunit protein uS11Family
L [auth l]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
L [auth l]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
L [auth l]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
M [auth m]IPR006032Small ribosomal subunit protein uS12Family
M [auth m]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth m]IPR005679Ribosomal protein uS12, bacterial-typeFamily
N [auth n]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
N [auth n]IPR001892Small ribosomal subunit protein uS13Family
N [auth n]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
N [auth n]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
N [auth n]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
O [auth o]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
O [auth o]IPR001209Small ribosomal subunit protein uS14Family
O [auth o]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
O [auth o]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
P [auth p]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
P [auth p]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
P [auth p]IPR000589Small ribosomal subunit protein uS15Family
R [auth r]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
R [auth r]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
R [auth r]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
R [auth r]IPR000266Small ribosomal subunit protein uS17Family
S [auth s]IPR001648Small ribosomal subunit protein bS18Family
S [auth s]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
S [auth s]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
B [auth b]IPR035104Ribosomal protein S1-likeFamily
B [auth b]IPR003029S1 domainDomain
B [auth b]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth t]IPR002222Small ribosomal subunit protein uS19Family
T [auth t]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
T [auth t]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
T [auth t]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
U [auth u]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
U [auth u]IPR002583Small ribosomal subunit protein bS20Family
V [auth c]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
V [auth c]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
V [auth c]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
V [auth c]IPR001865Small ribosomal subunit protein uS2Family
W [auth x]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
W [auth x]IPR027491Large ribosomal subunit protein bL31 type AFamily
W [auth x]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
W [auth x]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
X [auth w]IPR003489Ribosome hibernation promoting factor/RaiAFamily
X [auth w]IPR036567Ribosome hibernation promotion factor-likeHomologous Superfamily
X [auth w]IPR032528Sigma 54 modulation/S30EA ribosomal protein, C-terminalDomain
X [auth w]IPR038416Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamilyHomologous Superfamily
C [auth v]IPR013177Ribosomal protein mS38, C-terminalDomain
D [auth d]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
D [auth d]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
D [auth d]IPR004087K Homology domainDomain
D [auth d]IPR004044K Homology domain, type 2Domain
D [auth d]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
D [auth d]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
D [auth d]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
D [auth d]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
E [auth e]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
E [auth e]IPR002942RNA-binding S4 domainDomain
E [auth e]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
E [auth e]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth e]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
E [auth e]IPR022801Small ribosomal subunit protein uS4Family
F [auth f]IPR000851Small ribosomal subunit protein uS5Family
F [auth f]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
F [auth f]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
F [auth f]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth f]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
F [auth f]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
F [auth f]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
G [auth g]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
G [auth g]IPR000529Small ribosomal subunit protein bS6Family
G [auth g]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
G [auth g]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
G [auth g]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
H [auth h]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
H [auth h]IPR000235Small ribosomal subunit protein uS7Family
H [auth h]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
H [auth h]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
H [auth h]IPR023798Small ribosomal subunit protein uS7 domainDomain
I [auth i]IPR000630Small ribosomal subunit protein uS8Family
I [auth i]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
I [auth i]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily