8W34

HIV-1 intasome core assembled with wild-type integrase, 1F

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, G [auth I], A, B, C, D, G [auth I], H [auth K], I [auth L], J [auth M]	Integrase	DNA binding binding organic cyclic compound binding nucleic acid binding RNA-directed DNA polymerase activity catalytic activity, acting on DNA DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups endonuclease activity nuclease activity DNA binding binding organic cyclic compound binding nucleic acid binding RNA-directed DNA polymerase activity catalytic activity, acting on DNA DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups endonuclease activity nuclease activity hydrolase activity, acting on ester bonds hydrolase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	establishment of integrated proviral latency viral latency viral process establishment of viral latency biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process metabolic process establishment of integrated proviral latency viral latency viral process establishment of viral latency biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process DNA integration nucleic acid metabolic process viral genome integration into host DNA DNA recombination	-
E, K [auth N]	DNA (5'-D(APCPTPGPCPTPAPGPAPGPAPTPTPTPTPCPCPAP*C)-3')	-	-	-
F, L [auth O]	DNA (5'-D(PGPTPGPGPAPAPAPAPTPCPTPCPTPAPGPCP*A)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, G [auth I], A, B, C, D, G [auth I], H [auth K], I [auth L], J [auth M]	IPR017856	Integrase-like, N-terminal	Homologous Superfamily
A, B, C, D, G [auth I], A, B, C, D, G [auth I], H [auth K], I [auth L], J [auth M]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
A, B, C, D, G [auth I], A, B, C, D, G [auth I], H [auth K], I [auth L], J [auth M]	IPR003308	Integrase, N-terminal zinc-binding domain	Domain
A, B, C, D, G [auth I], A, B, C, D, G [auth I], H [auth K], I [auth L], J [auth M]	IPR001584	Integrase, catalytic core	Domain
A, B, C, D, G [auth I], A, B, C, D, G [auth I], H [auth K], I [auth L], J [auth M]	IPR001037	Integrase, C-terminal, retroviral	Domain
A, B, C, D, G [auth I], A, B, C, D, G [auth I], H [auth K], I [auth L], J [auth M]	IPR036862	Integrase, C-terminal domain superfamily, retroviral	Homologous Superfamily
A, B, C, D, G [auth I], A, B, C, D, G [auth I], H [auth K], I [auth L], J [auth M]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.