8VYN | pdb_00008vyn

Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, composite map (global and local) and model

External Resource: Annotation


SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
G, K, O
Light ChainIGLV1 Lambdaenvelope glycoprotein bSAbDab (2025-12-19)
F, J, N
Heavy ChainIGHV4 -envelope glycoprotein bSAbDab (2025-12-19)
E, I, M
Light ChainIGLV1 Lambdaenvelope glycoprotein bSAbDab (2025-12-19)
D, H, L
Heavy ChainIGHV1 -envelope glycoprotein bSAbDab (2025-12-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00606Herpesvirus Glycoprotein B ectodomain (Glycoprotein_B)Herpesvirus Glycoprotein B ectodomainThis domain corresponds to the ectodomain of glycoprotein B according to ECOD. Domain
A, B, C
PF17417Herpesvirus Glycoprotein B PH-like domain (Glycoprot_B_PH2)Herpesvirus Glycoprotein B PH-like domainThis domain corresponds to the second PH-like domain in herpesvirus glycoprotein B. Domain
A, B, C
PF17416Herpesvirus Glycoprotein B (Glycoprot_B_PH1)Herpesvirus Glycoprotein BThis domain has a PH-like fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G, K, O
1G2 Fab Light Chain---
F, J, N
1G2 Fab Heavy Chain---
E, I, M
7H3 Fab Light Chain---
D, H, L
7H3 Fab Heavy Chain---
A, B, C
Envelope glycoprotein B-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR035381Herpesvirus Glycoprotein B, PH-like domain 2Domain
A, B, C
IPR035377Herpesvirus Glycoprotein B, PH-like domain 1Domain
A, B, C
IPR055341Herpesvirus glycoprotein B ectodomain C-terminalDomain
A, B, C
IPR021044Herpesvirus Glycoprotein B, antigenic domain, N-terminalDomain
A, B, C
IPR000234Herpesvirus Glycoprotein BFamily
A, B, C
IPR038631Herpesvirus Glycoprotein B, PH-like domain 2 superfamilyHomologous Superfamily