Annotations: 8VYB

Cryo-EM structure of human core Rab3GAP1/2 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Porin_3	e8vybB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F: Porin_3	ECOD (v295.2)
A	Arm, HEAT_2, ARM_PUB, SIL1_FES1_HPBP1_C	e8vybA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F: Arm, HEAT_2, ARM_PUB, SIL1_FES1_HPBP1_C	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF14655	Rab3 GTPase-activating protein regulatory subunit N-terminus (RAB3GAP2_N)	Rab3 GTPase-activating protein regulatory subunit N-terminus	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Rab3 GTPase-activating protein non-catalytic subunit	small GTPase binding protein binding binding enzyme binding GTPase binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity GTPase regulator activity GTPase activator activity nucleoside-triphosphatase regulator activity	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport catabolic process macroautophagy cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism establishment of protein localization to organelle establishment of protein localization to membrane establishment of protein localization to endoplasmic reticulum membrane localization within membrane establishment of protein localization to endoplasmic reticulum synaptic signaling regulation of biological process signaling biological regulation cell-cell signaling cell communication positive regulation of organelle organization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization positive regulation of vacuole organization positive regulation of biological process autophagosome organization regulation of autophagy cellular component biogenesis cellular component organization positive regulation of metabolic process cellular component assembly positive regulation of autophagosome assembly cellular component organization or biogenesis positive regulation of macroautophagy positive regulation of cellular process positive regulation of autophagy autophagosome assembly organelle assembly vacuole organization positive regulation of cellular component biogenesis regulation of autophagosome assembly regulation of catabolic process regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization positive regulation of catabolic process organelle organization regulation of macroautophagy regulation of organelle assembly regulation of metabolic process positive regulation of organelle assembly regulation of molecular function regulation of catalytic activity regulation of hydrolase activity regulation of GTPase activity regulation of endoplasmic reticulum tubular network organization endoplasmic reticulum tubular network organization endoplasmic reticulum organization positive regulation of endoplasmic reticulum tubular network organization endomembrane system organization regulation of protein modification process positive regulation of protein metabolic process lipoprotein biosynthetic process lipoprotein metabolic process regulation of primary metabolic process protein lipidation positive regulation of protein modification process positive regulation of lipoprotein metabolic process positive regulation of biosynthetic process positive regulation of protein lipidation regulation of lipoprotein metabolic process positive regulation of macromolecule metabolic process protein metabolic process protein modification process regulation of biosynthetic process regulation of protein lipidation regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule biosynthetic process biosynthetic process macromolecule modification regulation of macromolecule biosynthetic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle vacuole autophagosome cytoplasm intracellular membrane-bounded organelle cytosol cell periphery plasma membrane membrane presynapse membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle vacuole autophagosome cytoplasm intracellular membrane-bounded organelle cytosol cell periphery plasma membrane membrane presynapse synapse cell junction presynaptic membrane plasma membrane region synaptic membrane protein-containing complex organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane
A	Isoform 2 of Rab3 GTPase-activating protein catalytic subunit	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity guanyl-nucleotide exchange factor activity	developmental process multicellular organismal process head development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development animal gross anatomical part developmental process system development positive regulation of cell communication cellular response to stimulus regulation of localization developmental process multicellular organismal process head development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development animal gross anatomical part developmental process system development positive regulation of cell communication cellular response to stimulus regulation of localization nitrogen compound transport regulation of cellular process response to stimulus synaptic transmission, glutamatergic regulation of glutamate secretion positive regulation of neurotransmitter secretion cell communication positive regulation of amine transport localization establishment of localization in cell regulation of amino acid transport glutamate secretion trans-synaptic signaling regulation of biological process positive regulation of neurotransmitter transport carboxylic acid transport neurotransmitter secretion positive regulation of synaptic transmission neurotransmitter transport establishment of localization regulation of secretion organic acid transport acidic amino acid transport signal release from synapse glutamate secretion, neurotransmission positive regulation of glutamate secretion, neurotransmission regulation of trans-synaptic signaling positive regulation of amino acid transport dicarboxylic acid transport positive regulation of glutamate neurotransmitter secretion in response to membrane depolarization cellular localization transport modulation of chemical synaptic transmission signaling positive regulation of biological process regulation of synaptic transmission, glutamatergic L-amino acid transport positive regulation of secretion by cell L-glutamate import synaptic signaling secretion by cell regulation of secretion by cell positive regulation of secretion signal release positive regulation of cellular process regulation of signaling secretion regulation of transport regulation of neurotransmitter transport biological regulation export from cell cell-cell signaling positive regulation of glutamate secretion chemical synaptic transmission positive regulation of synaptic transmission, glutamatergic positive regulation of organic acid transport amino acid transport amine transport positive regulation of transport regulation of glutamate secretion, neurotransmission regulation of neurotransmitter secretion regulation of organic acid transport anterograde trans-synaptic signaling regulation of cell communication cellular process regulation of amine transport positive regulation of signaling sensory organ development eye development visual system development camera-type eye development sensory system development anatomical structure morphogenesis face morphogenesis head morphogenesis face development body morphogenesis hypothalamus development forebrain development diencephalon development limbic system development small GTPase-mediated signal transduction intracellular signal transduction intracellular signaling cassette Rab protein signal transduction signal transduction regulation of neuronal synaptic plasticity regulation of synaptic plasticity regulation of short-term neuronal synaptic plasticity regulation of biological quality regulation of postsynaptic membrane potential system process chemical synaptic transmission, postsynaptic cell surface receptor signaling pathway nervous system process excitatory postsynaptic potential regulation of membrane potential establishment of protein localization establishment of protein localization to organelle establishment of protein localization to membrane establishment of protein localization to endoplasmic reticulum membrane localization within membrane establishment of protein localization to endoplasmic reticulum regulated exocytosis synaptic vesicle cycle synaptic vesicle exocytosis vesicle-mediated transport vesicle-mediated transport in synapse calcium ion-regulated exocytosis of neurotransmitter regulation of synaptic vesicle exocytosis exocytosis regulation of calcium ion-dependent exocytosis of neurotransmitter regulation of calcium ion-dependent exocytosis regulation of regulated secretory pathway calcium-ion regulated exocytosis regulation of vesicle-mediated transport regulation of exocytosis cellular component organization organelle organization lipid droplet organization cellular component organization or biogenesis positive regulation of organelle organization catabolic process regulation of cellular component organization positive regulation of cellular component organization macroautophagy positive regulation of vacuole organization autophagy autophagosome organization regulation of autophagy cellular component biogenesis positive regulation of metabolic process cellular component assembly positive regulation of autophagosome assembly positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of autophagy autophagosome assembly organelle assembly vacuole organization positive regulation of cellular component biogenesis regulation of autophagosome assembly regulation of catabolic process regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization positive regulation of catabolic process regulation of macroautophagy regulation of organelle assembly metabolic process regulation of metabolic process positive regulation of organelle assembly regulation of endoplasmic reticulum tubular network organization endoplasmic reticulum tubular network organization endoplasmic reticulum organization positive regulation of endoplasmic reticulum tubular network organization endomembrane system organization regulation of protein modification process positive regulation of protein metabolic process lipoprotein biosynthetic process lipoprotein metabolic process regulation of primary metabolic process protein lipidation positive regulation of protein modification process positive regulation of lipoprotein metabolic process positive regulation of biosynthetic process positive regulation of protein lipidation regulation of lipoprotein metabolic process positive regulation of macromolecule metabolic process protein metabolic process protein modification process regulation of biosynthetic process regulation of protein lipidation regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule biosynthetic process biosynthetic process macromolecule modification regulation of macromolecule biosynthetic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cytoplasm endomembrane system extracellular exosome extracellular vesicle extracellular organelle extracellular region membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cytoplasm endomembrane system extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytosol protein-containing complex organelle subcompartment membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane endoplasmic reticulum tubular network lipid droplet membraneless organelle intracellular membraneless organelle postsynapse synapse cell junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR026059	Rab3GAP regulatory subunit	Family
B	IPR029257	Rab3GAP regulatory subunit, C-terminal	Domain
B	IPR032839	Rab3-GAP regulatory subunit, N-terminal	Domain
A	IPR045700	Rab3GAP catalytic subunit	Family
A	IPR026147	Rab3GAP catalytic subunit, conserved domain	Domain
A	IPR045698	Rab3GAP catalytic subunit, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	: Q9H2M9	cataract-intellectual disability-hypogonadism syndrome Warburg micro syndrome Warburg micro syndrome 2 cataract intellectual disability Abnormality of the cornea dilated cardiomyopathy lung cancer ovarian cancer attention deficit hyperactivity disorder, inattentive type coloboma microcephaly Stevens-Johnson syndrome osteosarcoma
A	: Q15042	Warburg micro syndrome cataract-intellectual disability-hypogonadism syndrome cataract Warburg micro syndrome 1 Abnormality of the cornea Gaucher disease microcephaly tuberculosis cardiac arrest coloboma intellectual disability ovarian cancer keratoconus pancreatic ductal adenocarcinoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.