8VSJ | pdb_00008vsj

Engineered peptide-specific binder in complex with HLA-DR1/CLIP


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8040455 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054671 3000071 SCOP2B (2022-06-29)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D [auth H]Heavy ChainIGHV2 -hla class ii histocompatibility antigen, dr alpha chain | hla class ii histocompatibility antigen dr beta chainSAbDab (2025-12-19)
E [auth L]Light ChainIGKV9 Kappahla class ii histocompatibility antigen, dr alpha chain | hla class ii histocompatibility antigen dr beta chainSAbDab (2025-12-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF00993Class II histocompatibility antigen, alpha domain (MHC_II_alpha)Class II histocompatibility antigen, alpha domainDomain
PF00969Class II histocompatibility antigen, beta domain (MHC_II_beta)Class II histocompatibility antigen, beta domainDomain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
HLA class II histocompatibility antigen, DR alpha chain
HLA class II histocompatibility antigen DR beta chain-
Superantigen- - -
D [auth H]c44H10 Fab heavy chain---
E [auth L]c44H10 Fab light chain---
F [auth P]Class-II-associated invariant chain peptide

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
IPR003597Immunoglobulin C1-setDomain
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR014745MHC class II, alpha/beta chain, N-terminalHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR001003MHC class II, alpha chain, N-terminalDomain
IPR000353MHC class II, beta chain, N-terminalDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
IPR014745MHC class II, alpha/beta chain, N-terminalHomologous Superfamily
IPR003597Immunoglobulin C1-setDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR036342Superantigen MAMHomologous Superfamily
IPR042074Mycoplasma arthritidis-derived mitogen, C-terminalHomologous Superfamily
IPR015326Mycoplasma arthritidis-derived mitogenFamily
F [auth P]IPR022339MHC class II-associated invariant chainFamily
F [auth P]IPR000716Thyroglobulin type-1Domain
F [auth P]IPR043530HLA class II histocompatibility antigen, gamma subunitFamily
F [auth P]IPR015386MHC class II-associated invariant chain/CLIP, MHC II-interactingDomain
F [auth P]IPR036613MHC class II-associated invariant chain, trimerisation domain superfamilyHomologous Superfamily
F [auth P]IPR036857Thyroglobulin type-1 superfamilyHomologous Superfamily
F [auth P]IPR011988MHC class II-associated invariant chain, trimerisationDomain
F [auth P]IPR052001MHC Class II Gamma Chain/ThyroglobulinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP01903
F [auth P]PharosP04233