8VK1 | pdb_00008vk1

X-ray crystal structure of human IgE 4C8 Fab complex with Der p 2.0103


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth A]SCOP2B SuperfamilyE set domains 8107570 3000070 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyE set domains 8107570 3000070 SCOP2B (2022-06-29)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
A [auth E],
D [auth B]
Light ChainIGLV3 Lambdader p 2 variant 3SAbDab (2025-12-19)
C [auth F],
E [auth C]
Heavy ChainIGHV3 -der p 2 variant 3SAbDab (2025-12-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth D],
F [auth A]
PF02221ML domain (E1_DerP2_DerF2)ML domainML domain - MD-2-related lipid recognition domain. This family consists of proteins from plants, animals and fungi, including dust mite allergen Der P 2 (Swiss:P49278). It has been implicate in lipid recognition, particularly in the recognition of pa ...ML domain - MD-2-related lipid recognition domain. This family consists of proteins from plants, animals and fungi, including dust mite allergen Der P 2 (Swiss:P49278). It has been implicate in lipid recognition, particularly in the recognition of pathogen related products. A mutation in Npc2 (Swiss:Q15668) causes a rare form of Niemann-Pick type C2 disease. This domain has a similar topology to immunoglobulin domains.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth E],
D [auth B]
IgE 4C8 light chain---
B [auth D],
F [auth A]
Der p 2 variant 3- -
C [auth F],
E [auth C]
IgE 4C8 heavy chain---

InterPro: Protein Family Classification InterPro Database Homepage