8VJU | pdb_00008vju

Structure of Human Neurolysin in complex with dynorphin A13 peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8081087	3001975	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BACK	e8vjuA01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: BACK	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01432	Peptidase family M3 (Peptidase_M3)	Peptidase family M3	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C]	Dynorphin A(1-13)	opioid peptide activity molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity protein binding binding signaling receptor binding G protein-coupled receptor binding opioid receptor binding	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cell communication G protein-coupled receptor signaling pathway cellular process signal transduction neuropeptide signaling pathway trans-synaptic signaling synaptic signaling anterograde trans-synaptic signaling cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cell communication G protein-coupled receptor signaling pathway cellular process signal transduction neuropeptide signaling pathway trans-synaptic signaling synaptic signaling anterograde trans-synaptic signaling cell-cell signaling chemical synaptic transmission multicellular organismal process system process sensory perception nervous system process	cellular anatomical structure neuron to neuron synapse synapse cell junction hippocampal mossy fiber to CA3 synapse membrane-bounded organelle intracellular anatomical structure dense core granule intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cellular anatomical structure neuron to neuron synapse synapse cell junction hippocampal mossy fiber to CA3 synapse membrane-bounded organelle intracellular anatomical structure dense core granule intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle neuronal dense core vesicle extracellular region somatodendritic compartment cell body neuronal cell body cell periphery plasma membrane membrane cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection axon axon terminus presynapse distal axon neuron projection terminus
A	Neurolysin, mitochondrial	peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity binding peptide binding cation binding ion binding metal ion binding small molecule binding	metabolic process cellular process peptide metabolic process monosaccharide metabolic process regulation of cellular process gluconeogenesis regulation of primary metabolic process regulation of small molecule metabolic process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process metabolic process cellular process peptide metabolic process monosaccharide metabolic process regulation of cellular process gluconeogenesis regulation of primary metabolic process regulation of small molecule metabolic process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process small molecule biosynthetic process carbohydrate biosynthetic process biological regulation hexose metabolic process primary metabolic process monosaccharide biosynthetic process hexose biosynthetic process biosynthetic process regulation of gluconeogenesis regulation of carbohydrate biosynthetic process regulation of metabolic process glucose metabolic process cellular response to stimulus response to stimulus signaling G protein-coupled receptor signaling pathway signal transduction cell communication skeletal muscle cell differentiation cellular developmental process regulation of developmental process skeletal muscle tissue development regulation of cell differentiation regulation of striated muscle cell differentiation muscle cell differentiation myotube differentiation striated muscle tissue development muscle structure development skeletal muscle organ development regulation of skeletal muscle cell differentiation cell differentiation regulation of myotube differentiation anatomical structure development regulation of skeletal muscle fiber differentiation muscle tissue development muscle organ development developmental process animal organ development tissue development regulation of muscle cell differentiation skeletal muscle fiber differentiation striated muscle cell differentiation proteolysis protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular region cytosol cell periphery plasma membrane membrane mitochondrial intermembrane space membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular region cytosol cell periphery plasma membrane membrane mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle envelope organelle lumen mitochondrial envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C]	IPR000750	Proenkephalin B	Family
B [auth C]	IPR006024	Opioid neuropeptide precursor	Family
A	IPR024080	Neurolysin/Thimet oligopeptidase, N-terminal	Homologous Superfamily
A	IPR024079	Metallopeptidase, catalytic domain superfamily	Homologous Superfamily
A	IPR001567	Peptidase M3A/M3B catalytic domain	Domain
A	IPR024077	Neurolysin/Thimet oligopeptidase, domain 2	Homologous Superfamily
A	IPR045090	Peptidase M3A/M3B	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth C]	Pharos: P01213	spinocerebellar ataxia type 23 visual epilepsy Hypoxia cholestasis lingual-facial-buccal dyskinesia amphetamine abuse cocaine abuse respiratory failure cocaine dependence alcohol abuse dissociative amnesia pain agnosia pilocytic astrocytoma malignant glioma drug-induced dyskinesia spinocerebellar ataxia type 23 visual epilepsy Hypoxia cholestasis lingual-facial-buccal dyskinesia amphetamine abuse cocaine abuse respiratory failure cocaine dependence alcohol abuse dissociative amnesia pain agnosia pilocytic astrocytoma malignant glioma drug-induced dyskinesia medulloblastoma schizophrenia movement disorder neurodegenerative disease astrocytic tumor atypical teratoid rhabdoid tumor autosomal recessive juvenile Parkinson disease 2 hypotensive disorder bipolar disorder primitive neuroectodermal tumor major depressive disorder depressive disorder amnestic disorder oligodendroglioma parkinsonian disorder intellectual disability large cell medulloblastoma psoriasis malignant ependymoma glioblastoma opiate dependence
A	Pharos: Q9BYT8	adrenal cortex carcinoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm tuberculosis large cell medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ulcerative colitis non-small cell lung carcinoma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.