8VDF | pdb_00008vdf

Cryo-EM structure of human monoclonal antibody C7 targeting IT4VAR22 CIDRa1.7 (PfEMP1 A)

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth L]SdrD_Be8vdfL01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: SdrD_BECOD (v294.1)
B [auth H]SdrD_Be8vdfH01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: SdrD_BECOD (v294.1)
ASdrD_Be8vdfA01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: SdrD_BECOD (v294.1)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C [auth L]Light ChainIGLV3 Lambdaerythrocyte membrane protein 1SAbDab (2026-04-17)
B [auth H]Heavy ChainIGHV3 -erythrocyte membrane protein 1SAbDab (2026-04-17)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth L]C7 Fab lamda chain---
B [auth H]C7 Fab heavy chain---
Erythrocyte membrane protein 1 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR008602Duffy-antigen binding domainDomain
IPR004258Duffy-binding-like domainDomain
IPR044932Plasmodium falciparum erythrocyte membrane protein 1, acidic terminal segment superfamilyHomologous Superfamily
IPR049158PfEMP1, CIDRalpha1 domainDomain
IPR042202Duffy-antigen binding superfamilyHomologous Superfamily
IPR029211Plasmodium falciparum erythrocyte membrane protein 1, acidic terminal segmentDomain
IPR029210Plasmodium falciparum erythrocyte membrane protein-1, N-terminal segmentDomain
IPR041480Cysteine-rich interdomain region 1 gammaDomain
IPR054595Duffy-binding-like domain, C-terminal subdomainDomain