8V43 | pdb_00008v43

CryoEM Structure of Diffocin - postcontracted - Baseplate - final state

External Resource: Annotation

Protein Family Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], GA [auth U], HA [auth X], K [auth f], L [auth S], M [auth V], MA [auth c], NA [auth a], OA [auth b], R [auth g], S [auth T], T [auth W], Y [auth I], Z [auth G]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], GA [auth U], HA [auth X], K [auth f], L [auth S], M [auth V], MA [auth c], NA [auth a], OA [auth b], R [auth g], S [auth T], T [auth W], Y [auth I], Z [auth G]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], GA [auth U], HA [auth X], K [auth f], L [auth S], M [auth V], MA [auth c], NA [auth a], OA [auth b], R [auth g], S [auth T], T [auth W], Y [auth I], Z [auth G]	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], GA [auth U], HA [auth X], K [auth f], L [auth S], M [auth V], MA [auth c], NA [auth a], OA [auth b], R [auth g], S [auth T], T [auth W], Y [auth I], Z [auth G]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain
C [auth j], EA [auth l], J [auth i], LA [auth d], Q [auth k], C [auth j], EA [auth l], J [auth i], LA [auth d], Q [auth k], X [auth J]	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], W [auth E]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], W [auth E]	PF10076	Bacteriophage Mu-like, Gp48 (Phage_Mu_Gp48)	Bacteriophage Mu-like, Gp48	-	Family
B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], W [auth E]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], W [auth E]	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], W [auth E]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain
A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], IA [auth R], JA [auth e], N [auth O], O [auth n], PA [auth Z], U [auth Q], V [auth K]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], IA [auth R], JA [auth e], N [auth O], O [auth n], PA [auth Z], U [auth Q], V [auth K]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], IA [auth R], JA [auth e], N [auth O], O [auth n], PA [auth Z], U [auth Q], V [auth K]	PF10934	Contractile injection system sheath initiator (Sheath_initiator)	Contractile injection system sheath initiator	-	Family
A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], IA [auth R], JA [auth e], N [auth O], O [auth n], PA [auth Z], U [auth Q], V [auth K]	PF04865	Baseplate J-like protein barrel domain (Baseplate_J)	Baseplate J-like protein barrel domain	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in va ...	The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred. This entry represents a six stranded beta barrel domain found in various baseplate J-like proteins.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], GA [auth U], HA [auth X], K [auth f], L [auth S], M [auth V], MA [auth c], NA [auth a], OA [auth b], R [auth g], S [auth T], T [auth W], Y [auth I], Z [auth G]	IPR020287	Tail sheath protein, C-terminal domain	Domain
AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], AA [auth H], D [auth P], E [auth C], F [auth D], FA [auth h], GA [auth U], HA [auth X], K [auth f], L [auth S], M [auth V], MA [auth c], NA [auth a], OA [auth b], R [auth g], S [auth T], T [auth W], Y [auth I], Z [auth G]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
C [auth j], EA [auth l], J [auth i], LA [auth d], Q [auth k], C [auth j], EA [auth l], J [auth i], LA [auth d], Q [auth k], X [auth J]	IPR020288	Contractile injection system sheath initiator	Family
B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], B [auth A], DA [auth N], I [auth L], KA [auth Y], P [auth M], W [auth E]	IPR018755	Bacteriophage Mu-like, Gp48	Family
A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], IA [auth R], JA [auth e], N [auth O], O [auth n], PA [auth Z], U [auth Q], V [auth K]	IPR052399	Phage Baseplate Assembly Protein	Family
A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], A [auth v], BA [auth F], CA [auth o], G [auth B], H [auth m], IA [auth R], JA [auth e], N [auth O], O [auth n], PA [auth Z], U [auth Q], V [auth K]	IPR006949	Baseplate protein J-like, barrel domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.