8V2B | pdb_00008v2b

Cryo-EM structure of mouse type II OSM receptor complex: model for full extracellular assembly

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF21177	Leukemia inhibitory factor receptor, Ig-like domain (LIF-R_Ig-like)	Leukemia inhibitory factor receptor, Ig-like domain	This domain is found in Leukemia inhibitory factor receptor from mouse (LIF-R) and similar proteins from animals. LIF-R binds a cytokine that acts on many cell types including embryonic stem cells, megakaryocytes, osteoblasts, and neuronal cells. The ...	This domain is found in Leukemia inhibitory factor receptor from mouse (LIF-R) and similar proteins from animals. LIF-R binds a cytokine that acts on many cell types including embryonic stem cells, megakaryocytes, osteoblasts, and neuronal cells. The extracellular region of this protein shows a modular structure with two cytokine-binding modules (CBM, with Pfam:PF17971 representing the second subdomain of CBM1, D2) separated by an Ig-like domain (this entry) and followed by three membrane- proximal fibronectin type-III (FNIII) domains (Pfam:PF00041) This domain interacts directly with site 3 of Cilliary Neutrophic Factor (CNTF) [1,2].	Domain
C	PF17971	Leukemia inhibitory factor receptor D2 domain (LIFR_D2)	Leukemia inhibitory factor receptor D2 domain	This is the D2 domain in cytokine-binding module 1 (CBM1) found in Leukemia inhibitory factor receptor (LIFR) and OSM receptors (OSMR). LIFR has an extracellular region with a modular structure containing two cytokine-binding modules (CBM) separated ...	This is the D2 domain in cytokine-binding module 1 (CBM1) found in Leukemia inhibitory factor receptor (LIFR) and OSM receptors (OSMR). LIFR has an extracellular region with a modular structure containing two cytokine-binding modules (CBM) separated by an Ig-like domain and followed by three membrane-proximal fibronectin type-III (FNIII) domains. The D2 domain in CBM1 shows structural similarity to the corresponding CBM domains of both gp130 and IL-6Ralpha because it contains conserved structural features like the WSXWS motif [1] [2]. The WSXWS motif in cytokine receptors is a molecular switch involved in receptor activation [3].	Domain
C	PF25552	Leukemia inhibitory factor receptor D4 domain (LIFR_D4)	Leukemia inhibitory factor receptor D4 domain	This entry describes the domain 4 in Leukemia inhibitory factor regulator (LIFR) and other type I cytokine receptors found in mammals. They are involved in signal transduction for various cytokines, playing crucial roles in immune response, hematopoi ...	This entry describes the domain 4 in Leukemia inhibitory factor regulator (LIFR) and other type I cytokine receptors found in mammals. They are involved in signal transduction for various cytokines, playing crucial roles in immune response, hematopoiesis, and development. LIFR extracellular region is composed of D1-D2 (Pfam:PF17971) which is a cytokine binding homology region (CHR) followed by an Ig-like domain D3 (Pfam:PF21177), another CHR region composed of D4 and D5 [1-2] and three membrane-proximal fibronectin type-III (FNIII) domains (Pfam:PF00041).	Domain
C	PF00041	Fibronectin type III domain (fn3)	Fibronectin type III domain		Domain
B	PF25552	Leukemia inhibitory factor receptor D4 domain (LIFR_D4)	Leukemia inhibitory factor receptor D4 domain	This entry describes the domain 4 in Leukemia inhibitory factor regulator (LIFR) and other type I cytokine receptors found in mammals. They are involved in signal transduction for various cytokines, playing crucial roles in immune response, hematopoi ...	This entry describes the domain 4 in Leukemia inhibitory factor regulator (LIFR) and other type I cytokine receptors found in mammals. They are involved in signal transduction for various cytokines, playing crucial roles in immune response, hematopoiesis, and development. LIFR extracellular region is composed of D1-D2 (Pfam:PF17971) which is a cytokine binding homology region (CHR) followed by an Ig-like domain D3 (Pfam:PF21177), another CHR region composed of D4 and D5 [1-2] and three membrane-proximal fibronectin type-III (FNIII) domains (Pfam:PF00041).	Domain
B	PF00041	Fibronectin type III domain (fn3)	Fibronectin type III domain		Domain
A	PF01291	LIF / OSM family (LIF_OSM)	LIF / OSM family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Oncostatin-M-specific receptor subunit beta	protein binding binding cytokine binding oncostatin-M receptor activity molecular transducer activity transmembrane signaling receptor activity signaling receptor activity cytokine receptor activity immune receptor activity	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cellular process signal transduction cell communication	cell periphery cellular anatomical structure plasma membrane membrane cell surface external side of plasma membrane side of membrane
B	Interleukin-6 receptor subunit beta	protein tyrosine kinase activator activity enzyme regulator activity kinase activator activity enzyme activator activity molecular function activator activity molecular function regulator activity protein kinase activator activity protein kinase regulator activity kinase regulator activity ciliary neurotrophic factor receptor binding protein binding binding signaling receptor binding cytokine receptor binding protein tyrosine kinase activator activity enzyme regulator activity kinase activator activity enzyme activator activity molecular function activator activity molecular function regulator activity protein kinase activator activity protein kinase regulator activity kinase regulator activity ciliary neurotrophic factor receptor binding protein binding binding signaling receptor binding cytokine receptor binding interleukin-6 binding growth factor binding cytokine binding molecular transducer activity coreceptor activity signaling receptor activity scaffold protein binding interleukin-27 receptor activity interleukin-17 receptor activity transmembrane signaling receptor activity cytokine receptor activity immune receptor activity oncostatin-M receptor activity interleukin-6 receptor activity interleukin-6 receptor binding growth factor receptor binding leukemia inhibitory factor receptor activity ciliary neurotrophic factor receptor activity identical protein binding	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction cell communication Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction cell communication Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication cellular process signal transduction response to cytokine cytokine-mediated signaling pathway response to peptide response to chemical cellular response to cytokine stimulus immune response regulation of adaptive immune response positive regulation of biological process adaptive immune response positive regulation of response to stimulus positive regulation of immune response immune system process regulation of immune response regulation of immune system process positive regulation of adaptive immune response positive regulation of immune system process cell surface receptor signaling pathway via STAT neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death regulation of neuron apoptotic process cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation positive regulation of cellular process interleukin-6-mediated signaling pathway response to interleukin-6 cellular response to interleukin-6 developmental process regulation of osteoblast differentiation multicellular organismal process cellular developmental process regulation of developmental process regulation of cell differentiation osteoblast differentiation positive regulation of developmental process positive regulation of osteoblast differentiation ossification positive regulation of cell differentiation cell differentiation epithelium development digestive system development intestinal epithelial cell differentiation tube development intestinal epithelial cell development cell development tissue development digestive tract development epithelial cell differentiation multicellular organism development epithelial cell development columnar/cuboidal epithelial cell development anatomical structure development columnar/cuboidal epithelial cell differentiation system development positive regulation of cell communication positive regulation of signal transduction positive regulation of Notch signaling pathway positive regulation of signaling regulation of leukocyte activation regulation of cell activation positive regulation of cell activation T cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of leukocyte proliferation positive regulation of T cell activation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation positive regulation of multicellular organismal process positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of mononuclear cell proliferation regulation of multicellular organismal process regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation regulation of T cell proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation interleukin-11-mediated signaling pathway carbohydrate metabolic process energy derivation by oxidation of organic compounds glycogen metabolic process primary metabolic process generation of precursor metabolites and energy glucan metabolic process polysaccharide metabolic process metabolic process energy reserve metabolic process macromolecule metabolic process positive regulation of nervous system development astrocyte differentiation regulation of neurogenesis regulation of gliogenesis regulation of astrocyte differentiation positive regulation of gliogenesis regulation of cell development regulation of nervous system development neurogenesis gliogenesis positive regulation of neurogenesis positive regulation of astrocyte differentiation regulation of multicellular organismal development positive regulation of cell development regulation of glial cell differentiation nervous system development positive regulation of glial cell differentiation central nervous system development glial cell differentiation	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane protein-containing complex plasma membrane protein complex plasma membrane signaling receptor complex ciliary neurotrophic factor receptor complex membrane protein complex receptor complex membrane microdomain cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane protein-containing complex plasma membrane protein complex plasma membrane signaling receptor complex ciliary neurotrophic factor receptor complex membrane protein complex receptor complex membrane microdomain membrane raft somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection interleukin-6 receptor complex oncostatin-M receptor complex cell body neuronal cell body
A	Oncostatin-M	protein binding binding molecular function activator activity signaling receptor binding molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity oncostatin-M receptor binding cytokine receptor binding	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of MAPK cascade biological regulation positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication cellular process positive regulation of signaling regulation of programmed cell death positive regulation of apoptotic signaling pathway positive regulation of programmed cell death regulation of apoptotic process cell death positive regulation of apoptotic process apoptotic signaling pathway apoptotic process programmed cell death regulation of apoptotic signaling pathway immune response immune system process developmental process multicellular organism development multicellular organismal process anatomical structure development peripheral nervous system development nervous system development system development sexual reproduction reproductive process organelle fission meiotic cell cycle meiotic cell cycle process cellular component organization nuclear division organelle organization meiotic nuclear division cellular component organization or biogenesis cell cycle cell cycle process regulation of cellular component organization regulation of reproductive process negative regulation of biological process negative regulation of cell cycle negative regulation of cellular process regulation of cell cycle negative regulation of meiotic nuclear division regulation of meiotic cell cycle negative regulation of cellular component organization regulation of cell cycle process negative regulation of cell cycle process regulation of organelle organization regulation of meiotic nuclear division negative regulation of nuclear division negative regulation of organelle organization negative regulation of reproductive process regulation of nuclear division negative regulation of meiotic cell cycle response to stress response to heat response to abiotic stimulus response to temperature stimulus regulation of localization regulation of hormone secretion negative regulation of signaling transport negative regulation of transport hormone secretion negative regulation of cell communication localization negative regulation of secretion regulation of secretion by cell secretion by cell signal release negative regulation of hormone secretion negative regulation of secretion by cell regulation of biological quality regulation of transport secretion regulation of hormone levels export from cell cell-cell signaling establishment of localization regulation of secretion hormone transport positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process behavior multicellular organismal response to stress response to pain behavioral response to pain cell surface receptor signaling pathway response to cytokine oncostatin-M-mediated signaling pathway cytokine-mediated signaling pathway response to peptide response to chemical cellular response to cytokine stimulus	cellular anatomical structure extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C	IPR048497	Leukemia inhibitory factor receptor-like, Ig-like domain	Domain
C	IPR003961	Fibronectin type III	Domain
C	IPR052672	Type I Cytokine Receptor Family, Type 2 Subfamily	Family
C	IPR040817	Leukemia inhibitory factor receptor, D2 domain	Domain
C	IPR003529	Long hematopoietin receptor, Gp130 family 2, conserved site	Conserved Site
C	IPR036116	Fibronectin type III superfamily	Homologous Superfamily
B	IPR003529	Long hematopoietin receptor, Gp130 family 2, conserved site	Conserved Site
B	IPR050379	Type I Cytokine Receptor	Family
B	IPR010457	Immunoglobulin C2-set-like, ligand-binding	Domain
B	IPR015321	Type I cytokine receptor, cytokine-binding domain	Domain
B	IPR003961	Fibronectin type III	Domain
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR036116	Fibronectin type III superfamily	Homologous Superfamily
A	IPR009079	Four-helical cytokine-like, core	Homologous Superfamily
A	IPR019827	Leukemia inhibitory factor /oncostatin, conserved site	Conserved Site
A	IPR001581	Leukemia inhibitory factor /oncostatin	Family
A	IPR039578	Oncostatin-M	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.