8UU9

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]16S Ribosomal RNA---
J [auth j]Small ribosomal subunit protein uS10
K [auth k]Small ribosomal subunit protein uS11
L [auth l]Small ribosomal subunit protein uS12
M [auth m]Small ribosomal subunit protein uS13
N [auth n]Small ribosomal subunit protein uS14
O [auth o]Small ribosomal subunit protein uS15
P [auth p]Small ribosomal subunit protein bS16
Q [auth q]Small ribosomal subunit protein uS17
R [auth r]Small ribosomal subunit protein bS18
S [auth s]Small ribosomal subunit protein uS19
B [auth b]Small ribosomal subunit protein uS2
T [auth t]Small ribosomal subunit protein bS20
U [auth x]pe/E Hybrid State Phenylalanine tRNA---
V [auth w]F-Stop mRNA---
W [auth v]GTPase HflX -
X [auth A]23S Ribosomal RNA---
Y [auth B]5S Ribosomal RNA---
Z [auth C]Large ribosomal subunit protein uL2
AA [auth D]Large ribosomal subunit protein uL3
BA [auth E]Large ribosomal subunit protein uL4
CA [auth F]Large ribosomal subunit protein uL5
C [auth c]Small ribosomal subunit protein uS3
DA [auth G]Large ribosomal subunit protein uL6
EA [auth L]Large ribosomal subunit protein uL13
FA [auth M]Large ribosomal subunit protein uL14
GA [auth N]Large ribosomal subunit protein uL15
HA [auth O]Large ribosomal subunit protein uL16
IA [auth P]Large ribosomal subunit protein bL17
JA [auth Q]Large ribosomal subunit protein uL18
KA [auth R]Large ribosomal subunit protein bL19
LA [auth S]Large ribosomal subunit protein bL20
MA [auth T]Large ribosomal subunit protein bL21
D [auth d]Small ribosomal subunit protein uS4
NA [auth U]Large ribosomal subunit protein uL22
OA [auth V]Large ribosomal subunit protein uL23
PA [auth W]Large ribosomal subunit protein uL24
QA [auth Y]Large ribosomal subunit protein bL27
RA [auth Z]Large ribosomal subunit protein bL28
SA [auth 1]Large ribosomal subunit protein uL29
TA [auth 2]Large ribosomal subunit protein uL30
UA [auth 3]Large ribosomal subunit protein bL31B
VA [auth 4]Large ribosomal subunit protein bL32
WA [auth 5]Large ribosomal subunit protein bL33
E [auth e]Small ribosomal subunit protein uS5
XA [auth 6]Large ribosomal subunit protein bL34
YA [auth 7]Large ribosomal subunit protein bL35
ZA [auth 8]Large ribosomal subunit protein bL36
F [auth f]Small ribosomal subunit protein bS6
G [auth g]Small ribosomal subunit protein uS7
H [auth h]Small ribosomal subunit protein uS8
I [auth i]Small ribosomal subunit protein uS9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth j]IPR001848Small ribosomal subunit protein uS10Family
J [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
K [auth k]IPR001971Small ribosomal subunit protein uS11Family
K [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
K [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
N [auth n]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
N [auth n]IPR001209Small ribosomal subunit protein uS14Family
N [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth n]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
O [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
O [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth o]IPR000589Small ribosomal subunit protein uS15Family
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
Q [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth q]IPR000266Small ribosomal subunit protein uS17Family
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
S [auth s]IPR002222Small ribosomal subunit protein uS19Family
S [auth s]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
S [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
W [auth v]IPR032305GTP-binding protein, middle domainDomain
W [auth v]IPR016496GTPase HflXFamily
W [auth v]IPR030394HflX-type guanine nucleotide-binding (G) domainDomain
W [auth v]IPR025121GTPase HflX, N-terminalDomain
W [auth v]IPR042108GTPase HflX, N-terminal domain superfamilyHomologous Superfamily
W [auth v]IPR006073GTP binding domainDomain
W [auth v]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Z [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
Z [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Z [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
Z [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
Z [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Z [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
Z [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
Z [auth C]IPR002171Large ribosomal subunit protein uL2Family
AA [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
AA [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
AA [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
AA [auth D]IPR000597Large ribosomal subunit protein uL3Family
BA [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
BA [auth E]IPR002136Large ribosomal subunit protein uL4Family
BA [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
CA [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
CA [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
CA [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
CA [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
CA [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
CA [auth F]IPR002132Large ribosomal subunit protein uL5Family
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
DA [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
DA [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
DA [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
DA [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
DA [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
EA [auth L]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
EA [auth L]IPR005822Large ribosomal subunit protein uL13Family
EA [auth L]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
EA [auth L]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
FA [auth M]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
FA [auth M]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
FA [auth M]IPR000218Large ribosomal subunit protein uL14Family
FA [auth M]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
GA [auth N]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
GA [auth N]IPR021131Large ribosomal subunit protein uL15/eL18Domain
GA [auth N]IPR030878Large ribosomal subunit protein uL15Family
GA [auth N]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
GA [auth N]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
HA [auth O]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
HA [auth O]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
HA [auth O]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
HA [auth O]IPR016180Large ribosomal subunit protein uL16 domainDomain
HA [auth O]IPR047873Large ribosomal subunit protein uL16Family
IA [auth P]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
IA [auth P]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
IA [auth P]IPR000456Large ribosomal subunit protein bL17Family
JA [auth Q]IPR005484Large ribosomal subunit protein uL18Family
JA [auth Q]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
KA [auth R]IPR001857Large ribosomal subunit protein bL19Family
KA [auth R]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
KA [auth R]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
KA [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth S]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
LA [auth S]IPR005813Large ribosomal subunit protein bL20Family
MA [auth T]IPR028909Large ribosomal subunit protein bL21-likeFamily
MA [auth T]IPR001787Large ribosomal subunit protein bL21Family
MA [auth T]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
MA [auth T]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
NA [auth U]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
NA [auth U]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
NA [auth U]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
NA [auth U]IPR001063Large ribosomal subunit protein uL22Family
NA [auth U]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
OA [auth V]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
OA [auth V]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
OA [auth V]IPR013025Large ribosomal subunit protein uL23-likeFamily
PA [auth W]IPR003256Large ribosomal subunit protein uL24Family
PA [auth W]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
PA [auth W]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
PA [auth W]IPR005824KOWDomain
PA [auth W]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PA [auth W]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
QA [auth Y]IPR001684Large ribosomal subunit protein bL27Family
QA [auth Y]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
RA [auth Z]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
RA [auth Z]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
RA [auth Z]IPR026569Large ribosomal subunit protein bL28Family
RA [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
SA [auth 1]IPR001854Large ribosomal subunit protein uL29Family
SA [auth 1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
SA [auth 1]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
TA [auth 2]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
TA [auth 2]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
TA [auth 2]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
TA [auth 2]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
UA [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
UA [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
UA [auth 3]IPR027493Large ribosomal subunit protein bL31 type BFamily
UA [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
VA [auth 4]IPR002677Large ribosomal subunit protein bL32Family
VA [auth 4]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth 4]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
WA [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WA [auth 5]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
WA [auth 5]IPR001705Large ribosomal subunit protein bL33Family
WA [auth 5]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
XA [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
XA [auth 6]IPR000271Large ribosomal subunit protein bL34Family
YA [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
YA [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
YA [auth 7]IPR001706Large ribosomal subunit protein bL35Family
YA [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
ZA [auth 8]IPR000473Large ribosomal subunit protein bL36Family
ZA [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
H [auth h]IPR000630Small ribosomal subunit protein uS8Family
H [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
I [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth i]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
I [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth i]IPR000754Small ribosomal subunit protein uS9Family
I [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily