8UGO | pdb_00008ugo

Structure of the complex between Human LIAS and H-protein in the presence of 5'-deoxyadenosine

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth E], D [auth C], F	PF01597	Glycine cleavage H-protein (GCV_H)	Glycine cleavage H-protein	This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a comp ...	This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	Domain
A, C [auth B], E [auth D]	PF04055	Radical SAM superfamily (Radical_SAM)	Radical SAM superfamily	Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth E], D [auth C], F	Glycine cleavage system H protein, mitochondrial	-	glycine decarboxylation via glycine cleavage system catabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process glycine metabolic process proteinogenic amino acid metabolic process alpha-amino acid catabolic process proteinogenic amino acid catabolic process glycine catabolic process carboxylic acid catabolic process glycine decarboxylation via glycine cleavage system catabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process glycine metabolic process proteinogenic amino acid metabolic process alpha-amino acid catabolic process proteinogenic amino acid catabolic process glycine catabolic process carboxylic acid catabolic process metabolic process cellular process small molecule metabolic process small molecule catabolic process amino acid catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex catalytic complex oxidoreductase complex transferase complex glycine cleavage complex membrane-enclosed lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex catalytic complex oxidoreductase complex transferase complex glycine cleavage complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen
A, C [auth B], E [auth D]	Lipoyl synthase, mitochondrial	lipoate synthase activity sulfurtransferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	multicellular organismal process embryonic epithelial tube formation chordate embryonic development tube formation embryo development multicellular organism development epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching anatomical structure development epithelial tube morphogenesis system development developmental process multicellular organismal process embryonic epithelial tube formation chordate embryonic development tube formation embryo development multicellular organism development epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching anatomical structure development epithelial tube morphogenesis system development developmental process morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium nervous system development tissue development anatomical structure morphogenesis tissue morphogenesis neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure peptidyl-lysine modification primary metabolic process gene expression protein lipoylation macromolecule biosynthetic process protein maturation biosynthetic process macromolecule modification peptidyl-amino acid modification metabolic process cellular process protein metabolic process macromolecule metabolic process protein modification process response to stimulus defense response response to stress inflammatory response fatty acid metabolic process lipoate metabolic process monocarboxylic acid biosynthetic process lipoate biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process sulfur compound biosynthetic process sulfur compound metabolic process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process response to oxidative stress biological process involved in interspecies interaction between organisms response to lipid response to other organism response to oxygen-containing compound response to external stimulus response to lipopolysaccharide response to biotic stimulus response to bacterium response to chemical response to external biotic stimulus response to molecule of bacterial origin	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth E], D [auth C], F	IPR017453	Glycine cleavage system H-protein, subgroup	Family
B [auth E], D [auth C], F	IPR002930	Glycine cleavage system H-protein	Family
B [auth E], D [auth C], F	IPR033753	Glycine cleavage system H-protein/Simiate	Family
B [auth E], D [auth C], F	IPR011053	Single hybrid motif	Homologous Superfamily
B [auth E], D [auth C], F	IPR003016	2-oxo acid dehydrogenase, lipoyl-binding site	Binding Site
B [auth E], D [auth C], F	IPR000089	Biotin/lipoyl attachment	Domain
A, C [auth B], E [auth D]	IPR003698	Lipoyl synthase	Family
A, C [auth B], E [auth D]	IPR007197	Radical SAM	Domain
A, C [auth B], E [auth D]	IPR006638	Elp3/MiaA/NifB-like, radical SAM core domain	Domain
A, C [auth B], E [auth D]	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, C [auth B], E [auth D]	IPR058240	Radical SAM superfamily	Homologous Superfamily
A, C [auth B], E [auth D]	IPR031691	Lipoyl synthase, N-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth E], D [auth C], F	Pharos: P23434	glycine encephalopathy Epileptic encephalopathy intellectual disability
A, C [auth B], E [auth D]	Pharos: O43766	lipoic acid synthetase deficiency bladder exstrophy herpes zoster peripheral arterial disease Epileptic encephalopathy interstitial cystitis fatal multiple mitochondrial dysfunctions syndrome Leigh syndrome ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.