8U80 | pdb_00008u80

KCTD5/Cullin3/Gbeta1gamma2 Complex: Local Refinment of KCTD5(BTB)/Cullin3(NTD)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth C5]	SCOP2B Superfamily	Cullin repeat-like	8084778	3000059	SCOP2B (2022-06-29)
I [auth C4]	SCOP2B Superfamily	Cullin repeat-like	8084778	3000059	SCOP2B (2022-06-29)
H [auth C3]	SCOP2B Superfamily	Cullin repeat-like	8084778	3000059	SCOP2B (2022-06-29)
G [auth C2]	SCOP2B Superfamily	Cullin repeat-like	8084778	3000059	SCOP2B (2022-06-29)
F [auth C1]	SCOP2B Superfamily	Cullin repeat-like	8084778	3000059	SCOP2B (2022-06-29)
E [auth K5]	SCOP2B Superfamily	POZ domain	8067485	3000894	SCOP2B (2022-06-29)
D [auth K4]	SCOP2B Superfamily	POZ domain	8067485	3000894	SCOP2B (2022-06-29)
C [auth K3]	SCOP2B Superfamily	POZ domain	8067485	3000894	SCOP2B (2022-06-29)
B [auth K2]	SCOP2B Superfamily	POZ domain	8067485	3000894	SCOP2B (2022-06-29)
A [auth K1]	SCOP2B Superfamily	POZ domain	8067485	3000894	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	PF00888	Cullin alpha solenoid domain (Cullin)	Cullin alpha solenoid domain	-	Repeat
A [auth K1], B [auth K2], C [auth K3], D [auth K4], E [auth K5]	PF02214	BTB/POZ domain (BTB_2)	BTB/POZ domain	In voltage-gated K+ channels this domain is responsible for subfamily-specific assembly of alpha-subunits into functional tetrameric channels [1]. In KCTD1 (Swiss:Q719H9) this domain functions as a transcriptional repressor [2]. It also mediates homo ...	In voltage-gated K+ channels this domain is responsible for subfamily-specific assembly of alpha-subunits into functional tetrameric channels [1]. In KCTD1 (Swiss:Q719H9) this domain functions as a transcriptional repressor [2]. It also mediates homomultimerisation of KCTD1 and interaction of KCTD1 with the transcription factor AP-2-alpha [2-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	Cullin-3	ubiquitin ligase complex scaffold activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding signaling receptor binding Notch binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity ubiquitin ligase complex scaffold activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding signaling receptor binding Notch binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding POZ domain binding protein domain specific binding identical protein binding cyclin binding	cellular response to stimulus catabolic process response to stimulus proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process cellular response to misfolded protein response to misfolded protein cellular response to stress modification-dependent macromolecule catabolic process response to stress protein metabolic process cellular response to topologically incorrect protein primary metabolic process proteasomal protein catabolic process cellular response to stimulus catabolic process response to stimulus proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process cellular response to misfolded protein response to misfolded protein cellular response to stress modification-dependent macromolecule catabolic process response to stress protein metabolic process cellular response to topologically incorrect protein primary metabolic process proteasomal protein catabolic process protein catabolic process nuclear protein quality control by the ubiquitin-proteasome system modification-dependent protein catabolic process response to topologically incorrect protein ubiquitin-dependent protein catabolic process metabolic process cellular process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins developmental process multicellular organism development multicellular organismal process embryonic cleavage anatomical structure development cell division embryo development gland development animal organ development liver development anatomical structure morphogenesis gland morphogenesis hepaticobiliary system development animal organ morphogenesis liver morphogenesis system development regulation of cellular process negative regulation of biological process negative regulation of type I interferon production cytokine production negative regulation of cellular process regulation of cytokine production regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process type I interferon production negative regulation of metabolic process biological regulation negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process negative regulation of multicellular organismal process regulation of metabolic process regulation of type I interferon production regulation of cytokinesis positive regulation of cell division regulation of cell cycle process positive regulation of biological process cytokinesis positive regulation of cell cycle regulation of cell division positive regulation of cytokinesis positive regulation of cell cycle process cell cycle regulation of cell cycle positive regulation of cellular process cell cycle process protein destabilization regulation of protein stability regulation of biological quality anaphase-promoting complex-dependent catabolic process mitotic nuclear division mitotic metaphase chromosome alignment organelle fission chromosome organization sister chromatid segregation mitotic cell cycle metaphase chromosome alignment cellular component organization localization organelle organization nuclear division mitotic cell cycle process chromosome localization organelle localization nuclear chromosome segregation mitotic sister chromatid segregation cellular component organization or biogenesis chromosome segregation establishment of organelle localization vesicle budding from membrane cellular localization transport vesicle targeting, to, from or within Golgi vesicle-mediated transport vesicle targeting vesicle organization cellular component biogenesis cellular component assembly establishment of localization in cell protein-containing complex assembly vesicle coating vesicle targeting, rough ER to cis-Golgi membrane organization vesicle localization protein-containing complex organization establishment of vesicle localization intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization COPII-coated vesicle budding COPII vesicle coating Golgi vesicle transport regulation of cell cycle phase transition cell cycle phase transition regulation of mitotic cell cycle phase transition regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle phase transition positive regulation of mitotic cell cycle mitotic cell cycle phase transition protein autoubiquitination protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal actomyosin structure organization actin cytoskeleton organization actin filament organization actin filament bundle organization contractile actin filament bundle assembly actin filament-based process actin filament bundle assembly stress fiber assembly supramolecular fiber organization cytoskeleton organization cell migration cell motility response to oxidative stress cellular response to chemical stimulus response to chemical cellular response to oxidative stress cellular response to chemical stress fibroblast apoptotic process apoptotic process cell death programmed cell death protein polyubiquitination cellular response to acid chemical cellular response to amino acid stimulus response to acid chemical response to amino acid protein K48-linked ubiquitination G1/S transition of mitotic cell cycle cell cycle G1/S phase transition stem cell division RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription negative regulation of RNA metabolic process cellular response to nitrogen compound response to endogenous stimulus response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound regulation of cellular response to insulin stimulus cellular response to oxygen-containing compound cellular response to endogenous stimulus response to hormone regulation of response to stimulus response to insulin cellular response to insulin stimulus cellular response to hormone stimulus protein monoubiquitination kidney development renal system development positive regulation of organelle organization regulation of mitotic nuclear division positive regulation of mitotic nuclear division positive regulation of mitotic metaphase/anaphase transition mitotic sister chromatid separation positive regulation of nuclear division regulation of chromosome organization regulation of organelle organization regulation of chromosome separation regulation of chromosome segregation regulation of metaphase/anaphase transition of cell cycle regulation of cellular component organization regulation of mitotic sister chromatid separation positive regulation of cellular component organization regulation of mitotic metaphase/anaphase transition positive regulation of metaphase/anaphase transition of cell cycle chromosome separation regulation of sister chromatid segregation positive regulation of mitotic sister chromatid separation regulation of nuclear division metaphase/anaphase transition of mitotic cell cycle positive regulation of chromosome separation metaphase/anaphase transition of cell cycle signaling intracellular signal transduction cell communication apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway regulation protein catabolic process at synapse regulation of catabolic process regulation protein catabolic process at postsynapse embryonic morphogenesis gastrulation integrin-mediated signaling pathway cell surface receptor signaling pathway regulation of protein modification process positive regulation of protein metabolic process regulation of protein ubiquitination positive regulation of post-translational protein modification positive regulation of metabolic process positive regulation of protein modification process positive regulation of macromolecule metabolic process regulation of protein modification by small protein conjugation or removal positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction positive regulation of TORC1 signaling positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of TOR signaling regulation of TORC1 signaling TOR signaling regulation of signaling regulation of TOR signaling positive regulation of intracellular signal transduction regulation of cell communication TORC1 signaling positive regulation of signaling cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation small GTPase-mediated signal transduction negative regulation of Rho protein signal transduction negative regulation of signaling regulation of small GTPase mediated signal transduction negative regulation of intracellular signal transduction Rho protein signal transduction negative regulation of cell communication intracellular signaling cassette negative regulation of response to stimulus negative regulation of small GTPase mediated signal transduction regulation of Rho protein signal transduction negative regulation of signal transduction trophectodermal cell differentiation cellular developmental process chordate embryonic development cell morphogenesis in utero embryonic development blastocyst formation embryo development ending in birth or egg hatching cell differentiation trophectodermal cellular morphogenesis anatomical structure formation involved in morphogenesis blastocyst development Wnt signaling pathway defense response inflammatory response cell projection organization	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane extracellular exosome membrane-bounded organelle extracellular vesicle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle polymeric cytoskeletal fiber spindle microtubule polar microtubule supramolecular fiber microtubule supramolecular polymer supramolecular complex cytoplasm cytosol cell projection cilium 9+2 motile cilium sperm flagellum motile cilium plasma membrane bounded cell projection synapse cell junction glutamatergic synapse Golgi apparatus intracellular membrane-bounded organelle endomembrane system postsynapse centrosome microtubule organizing center cell periphery plasma membrane mitotic spindle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex Cul3-RING ubiquitin ligase complex intracellular protein-containing complex
A [auth K1], B [auth K2], C [auth K3], D [auth K4], E [auth K5]	BTB/POZ domain-containing protein KCTD5	protein binding binding cullin family protein binding protein-containing complex binding identical protein binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex Cul3-RING ubiquitin ligase complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex Cul3-RING ubiquitin ligase complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR045093	Cullin	Family
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR016158	Cullin homology domain	Domain
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR001373	Cullin, N-terminal	Domain
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR016157	Cullin, conserved site	Conserved Site
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR059120	Cullin-like, alpha+beta domain	Domain
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR019559	Cullin, neddylation domain	Domain
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR036317	Cullin homology domain superfamily	Homologous Superfamily
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	IPR016159	Cullin repeat-like-containing domain superfamily	Homologous Superfamily
A [auth K1], B [auth K2], C [auth K3], D [auth K4], E [auth K5]	IPR003131	Potassium channel tetramerisation-type BTB domain	Domain
A [auth K1], B [auth K2], C [auth K3], D [auth K4], E [auth K5]	IPR000210	BTB/POZ domain	Domain
A [auth K1], B [auth K2], C [auth K3], D [auth K4], E [auth K5]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
F [auth C1], G [auth C2], H [auth C3], I [auth C4], J [auth C5]	Pharos: Q13618	pseudohypoaldosteronism type 2E melanoma prostate cancer Neurodevelopmental Disorders pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma anorexia nervosa tuberculosis atypical teratoid rhabdoid tumor cutaneous melanoma intellectual disability malignant ependymoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm pseudohypoaldosteronism type 2E melanoma prostate cancer Neurodevelopmental Disorders pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma anorexia nervosa tuberculosis atypical teratoid rhabdoid tumor cutaneous melanoma intellectual disability malignant ependymoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma spina bifida astrocytic tumor autism spectrum disorder epilepsy large cell medulloblastoma malignant glioma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor pseudohypoaldosteronism type 2A subependymal giant cell astrocytoma attention deficit hyperactivity disorder, inattentive type breast cancer glioblastoma lung cancer malignant mesothelioma
A [auth K1], B [auth K2], C [auth K3], D [auth K4], E [auth K5]	Pharos: Q9NXV2	ductal breast carcinoma in situ malignant ependymoma osteosarcoma polycystic ovary syndrome glioblastoma malignant glioma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor invasive ductal breast carcinoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.