8U72 | pdb_00008u72

Cryo-EM structure of the SPARTA oligomer with guide RNA and target DNA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
P [auth G]V-sete8u72G1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: V-setECOD (v295)
N [auth C]V-sete8u72C1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: V-setECOD (v295)
EV-sete8u72E1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: V-setECOD (v295)
D [auth I]V-sete8u72I1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: V-setECOD (v295)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth H],
L [auth D],
M [auth B],
O [auth F]		PF13676TIR domain (TIR_2)TIR domainThis is a family of Toll-like receptors. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth V],
G [auth N],
I [auth T],
K [auth Y]		DNA (5'-D(P*TP*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*C)-3')---
D [auth I],
E,
N [auth C],
P [auth G]		Piwi domain-containing protein - -
C [auth H],
L [auth D],
M [auth B],
O [auth F]		TIR domain-containing protein -
A [auth U],
F [auth M],
H [auth S],
J [auth X]		RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*A)-3')---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth I],
E,
N [auth C],
P [auth G]		IPR036397Ribonuclease H superfamilyHomologous Superfamily
D [auth I],
E,
N [auth C],
P [auth G]		IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
C [auth H],
L [auth D],
M [auth B],
O [auth F]		IPR000157Toll/interleukin-1 receptor homology (TIR) domainDomain
C [auth H],
L [auth D],
M [auth B],
O [auth F]		IPR035897Toll/interleukin-1 receptor homology (TIR) domain superfamilyHomologous Superfamily