8TYS | pdb_00008tys

Adaptive mechanism of collagen IV scaffold assembly in Drosophila: crystal structure of tissue-extracted NC1 hexamer

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e8tysF1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Helicase_C	F:	ECOD (20:10:01)
D		e8tysD1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Helicase_C	F:	ECOD (20:10:01)
C		e8tysC1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Helicase_C	F:	ECOD (20:10:01)
A		e8tysA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Helicase_C	F:	ECOD (20:10:01)
E		e8tysE1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Helicase_C	F:	ECOD (20:10:01)
B		e8tysB1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Helicase_C	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, D, F	PF01413	C-terminal tandem repeated domain in type 4 procollagen (C4)	C-terminal tandem repeated domain in type 4 procollagen	Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.	Domain
B, E	PF01413	C-terminal tandem repeated domain in type 4 procollagen (C4)	C-terminal tandem repeated domain in type 4 procollagen	Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, D, F	Collagen alpha-1(IV) chain	structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength	multicellular organismal process cardiac muscle cell development cellular developmental process cell development muscle cell differentiation striated muscle tissue development muscle structure development multicellular organism development striated muscle cell development muscle cell development cell differentiation anatomical structure development cardiac cell development muscle tissue development multicellular organismal process cardiac muscle cell development cellular developmental process cell development muscle cell differentiation striated muscle tissue development muscle structure development multicellular organism development striated muscle cell development muscle cell development cell differentiation anatomical structure development cardiac cell development muscle tissue development system development developmental process heart development cardiac muscle tissue development animal organ development cardiac muscle cell differentiation tissue development cardiocyte differentiation circulatory system development cellular process striated muscle cell differentiation system process epithelial structure maintenance homeostatic process digestive system process intestinal epithelial structure maintenance tissue homeostasis maintenance of gastrointestinal epithelium digestion multicellular organismal-level homeostasis anatomical structure homeostasis morphogenesis of embryonic epithelium epithelium development embryonic morphogenesis morphogenesis of an epithelium embryo development dorsal closure embryonic development via the syncytial blastoderm tissue morphogenesis anatomical structure morphogenesis embryo development ending in birth or egg hatching digestive system development post-embryonic digestive tract morphogenesis tube development digestive tract development tube morphogenesis digestive tract morphogenesis post-embryonic animal morphogenesis post-embryonic development cellular component organization extracellular matrix organization cellular component organization or biogenesis basement membrane organization extracellular structure organization external encapsulating structure organization	basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure complex of network-forming collagens protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network collagenous component of basement membrane collagen type IV trimer complex of collagen trimers basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure complex of network-forming collagens protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network collagenous component of basement membrane collagen type IV trimer complex of collagen trimers supramolecular complex
B, E	Collagen IV, chain Viking	structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength	muscle structure development developmental process somatic muscle development anatomical structure development Malpighian tubule development multicellular organismal process embryo development renal system development multicellular organism development tube morphogenesis renal tubule development hindgut development epithelial tube morphogenesis system development muscle structure development developmental process somatic muscle development anatomical structure development Malpighian tubule development multicellular organismal process embryo development renal system development multicellular organism development tube morphogenesis renal tubule development hindgut development epithelial tube morphogenesis system development epithelium development Malpighian tubule morphogenesis digestive system development tube development embryonic morphogenesis hindgut morphogenesis animal organ development morphogenesis of an epithelium tissue development digestive tract development tissue morphogenesis anatomical structure morphogenesis digestive tract morphogenesis embryonic hindgut morphogenesis renal tubule morphogenesis anterior Malpighian tubule development embryo development ending in birth or egg hatching cellular component organization extracellular matrix organization cellular process cellular component organization or biogenesis basement membrane organization extracellular structure organization external encapsulating structure organization	basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure complex of network-forming collagens protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network collagenous component of basement membrane collagen type IV trimer complex of collagen trimers basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure complex of network-forming collagens protein-containing complex network-forming collagen trimer collagen trimer solid phase of basement membrane chicken-wire-like collagen network collagenous component of basement membrane collagen type IV trimer complex of collagen trimers supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, D, F	IPR008160	Collagen triple helix repeat	Repeat
A, C, D, F	IPR016187	C-type lectin fold	Homologous Superfamily
A, C, D, F	IPR001442	Collagen IV, non-collagenous	Domain
A, C, D, F	IPR036954	Collagen IV, non-collagenous domain superfamily	Homologous Superfamily
A, C, D, F	IPR050149	Collagen superfamily	Family
B, E	IPR008160	Collagen triple helix repeat	Repeat
B, E	IPR016187	C-type lectin fold	Homologous Superfamily
B, E	IPR001442	Collagen IV, non-collagenous	Domain
B, E	IPR036954	Collagen IV, non-collagenous domain superfamily	Homologous Superfamily
B, E	IPR050149	Collagen superfamily	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.