8TU1 | pdb_00008tu1

The Capsid of Porcine Bocavirus 1

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth t]	Serpin	e8tu1t1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
Z	Serpin	e8tu1Z1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
YA [auth s]	Serpin	e8tu1s1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
Y	Serpin	e8tu1Y1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
XA [auth r]	Serpin	e8tu1r1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
X	Serpin	e8tu1X1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
WA [auth q]	Serpin	e8tu1q1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
W	Serpin	e8tu1W1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
VA [auth p]	Serpin	e8tu1p1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
V	Serpin	e8tu1V1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
UA [auth o]	Serpin	e8tu1o1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
U	Serpin	e8tu1U1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
TA [auth n]	Serpin	e8tu1n1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
T	Serpin	e8tu1T1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
SA [auth m]	Serpin	e8tu1m1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
S	Serpin	e8tu1S1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
RA [auth l]	Serpin	e8tu1l1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
R	Serpin	e8tu1R1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
QA [auth k]	Serpin	e8tu1k1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
Q	Serpin	e8tu1Q1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
PA [auth j]	Serpin	e8tu1j1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
P	Serpin	e8tu1P1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
OA [auth i]	Serpin	e8tu1i1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
O	Serpin	e8tu1O1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
NA [auth h]	Serpin	e8tu1h1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
N	Serpin	e8tu1N1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
MA [auth g]	Serpin	e8tu1g1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
M	Serpin	e8tu1M1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
LA [auth f]	Serpin	e8tu1f1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
L	Serpin	e8tu1L1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
KA [auth e]	Serpin	e8tu1e1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
K	Serpin	e8tu1K1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
JA [auth d]	Serpin	e8tu1d1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
J	Serpin	e8tu1J1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
IA [auth c]	Serpin	e8tu1c1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
I	Serpin	e8tu1I1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
HB [auth 8]	Serpin	e8tu181	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
HA [auth b]	Serpin	e8tu1b1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
H	Serpin	e8tu1H1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
GB [auth 7]	Serpin	e8tu171	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
GA [auth a]	Serpin	e8tu1a1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
G	Serpin	e8tu1G1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
FB [auth z]	Serpin	e8tu1z1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
FA [auth 6]	Serpin	e8tu161	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
F	Serpin	e8tu1F1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
EB [auth y]	Serpin	e8tu1y1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
EA [auth 5]	Serpin	e8tu151	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
E	Serpin	e8tu1E1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
DB [auth x]	Serpin	e8tu1x1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
DA [auth 4]	Serpin	e8tu141	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
D	Serpin	e8tu1D1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
CB [auth w]	Serpin	e8tu1w1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
CA [auth 3]	Serpin	e8tu131	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
C	Serpin	e8tu1C1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
BB [auth v]	Serpin	e8tu1v1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
BA [auth 2]	Serpin	e8tu121	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
B	Serpin	e8tu1B1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
AB [auth u]	Serpin	e8tu1u1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
AA [auth 1]	Serpin	e8tu111	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
A	V-set	e8tu1A1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: V-set	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	VP2	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.