8TOF

Rpd3S bound to an H3K36Cme3 modified nucleosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth c]SCOP2B SuperfamilyCore histone-like8067126 3001387 SCOP2B (2022-06-29)
P [auth g]SCOP2B SuperfamilyCore histone-like8067126 3001387 SCOP2B (2022-06-29)
M [auth d]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
Q [auth h]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyChromo domain-like8089214 3000161 SCOP2B (2022-06-29)
J [auth a]SCOP2B SuperfamilyCore histone-like8096712 3001387 SCOP2B (2022-06-29)
N [auth e]SCOP2B SuperfamilyCore histone-like8096712 3001387 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Transcriptional regulatory protein SIN3
L [auth c],
P [auth g]
Histone H2A -
M [auth d],
Q [auth h]
Histone H2B 1.1 -
R [auth x]histone N-terminal tail---
Histone deacetylase RPD3
C [auth D],
D [auth E]
Chromatin modification-related protein EAF3-
E [auth F],
F [auth G]
Transcriptional regulatory protein RCO1
G [auth H]Rco1---
H [auth N]DNA (176-MER)---
I [auth T]DNA (176-MER)---
J [auth a],
N [auth e]
Histone H3 -
K [auth b],
O [auth f]
Histone H4 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR039774Transcriptional regulatory protein Sin3-likeFamily
IPR013194Histone deacetylase interacting domainDomain
IPR003822Paired amphipathic helixRepeat
IPR036600Paired amphipathic helix superfamilyHomologous Superfamily
IPR031693Sin3, C-terminalDomain
L [auth c],
P [auth g]
IPR009072Histone-foldHomologous Superfamily
L [auth c],
P [auth g]
IPR007125Histone H2A/H2B/H3Domain
L [auth c],
P [auth g]
IPR002119Histone H2AFamily
L [auth c],
P [auth g]
IPR032454Histone H2A, C-terminal domainDomain
L [auth c],
P [auth g]
IPR032458Histone H2A conserved siteConserved Site
M [auth d],
Q [auth h]
IPR009072Histone-foldHomologous Superfamily
M [auth d],
Q [auth h]
IPR007125Histone H2A/H2B/H3Domain
M [auth d],
Q [auth h]
IPR000558Histone H2BFamily
IPR000286Histone deacetylase familyFamily
IPR023801Histone deacetylase domainDomain
IPR003084Histone deacetylaseFamily
IPR037138Histone deacetylase domain superfamilyHomologous Superfamily
IPR023696Ureohydrolase domain superfamilyHomologous Superfamily
C [auth D],
D [auth E]
IPR000953Chromo/chromo shadow domainDomain
C [auth D],
D [auth E]
IPR016197Chromo-like domain superfamilyHomologous Superfamily
C [auth D],
D [auth E]
IPR025995RNA binding activity-knot of a chromodomainDomain
C [auth D],
D [auth E]
IPR008676MRGFamily
C [auth D],
D [auth E]
IPR026541MRG domainDomain
C [auth D],
D [auth E]
IPR038217MRG, C-terminal domain superfamilyHomologous Superfamily
E [auth F],
F [auth G]
IPR001965Zinc finger, PHD-typeDomain
E [auth F],
F [auth G]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
E [auth F],
F [auth G]
IPR019787Zinc finger, PHD-fingerDomain
E [auth F],
F [auth G]
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
E [auth F],
F [auth G]
IPR019786Zinc finger, PHD-type, conserved siteConserved Site
J [auth a],
N [auth e]
IPR009072Histone-foldHomologous Superfamily
J [auth a],
N [auth e]
IPR007125Histone H2A/H2B/H3Domain
J [auth a],
N [auth e]
IPR000164Histone H3/CENP-AFamily
K [auth b],
O [auth f]
IPR009072Histone-foldHomologous Superfamily
K [auth b],
O [auth f]
IPR001951Histone H4Family
K [auth b],
O [auth f]
IPR035425CENP-T/Histone H4, histone foldDomain
K [auth b],
O [auth f]
IPR019809Histone H4, conserved siteConserved Site
K [auth b],
O [auth f]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain