8TO5 | pdb_00008to5

Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
K [auth W]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
I [auth U]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
G [auth S]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
E [auth Q]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
C [auth O]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
A [auth M]	SCOP2B Superfamily	Globin-like	8064876	3000554	SCOP2B (2022-06-29)
L [auth X]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
J [auth V]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
H [auth T]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
F [auth R]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
D [auth P]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
B [auth N]	SCOP2B Superfamily	Globin-like	8064834	3000554	SCOP2B (2022-06-29)
M [auth b]	SCOP2B Superfamily	Phycobilisome linker domain-like	8052316	3002104	SCOP2B (2022-06-29)
M [auth b]	SCOP2B Superfamily	Phycobilisome linker domain-like	8052317	3002104	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	C-phycocyanin alpha subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	C-phycocyanin beta subunit	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
M [auth b]	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
N [auth c]	Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	IPR006246	Phycocyanin, alpha subunit	Family
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	IPR009050	Globin-like superfamily	Homologous Superfamily
A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], A [auth M], C [auth O], E [auth Q], G [auth S], I [auth U], K [auth W]	IPR012128	Phycobilisome, alpha/beta subunit	Family
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	IPR006247	Phycocyanin, beta subunit	Family
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	IPR012128	Phycobilisome, alpha/beta subunit	Family
M [auth b]	IPR016470	Phycobilisome linker protein	Family
M [auth b]	IPR008213	CpcD-like domain	Domain
M [auth b]	IPR001297	Phycobilisome linker domain	Domain
M [auth b]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily
N [auth c]	IPR016470	Phycobilisome linker protein	Family
N [auth c]	IPR008213	CpcD-like domain	Domain
N [auth c]	IPR001297	Phycobilisome linker domain	Domain
N [auth c]	IPR038255	Phycobilisome linker domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], B [auth N], D [auth P], F [auth R], H [auth T], J [auth V], L [auth X]	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.